EcoGene: Difference between revisions
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=Using {{PAGENAME}}= | =Using {{PAGENAME}}= | ||
==Browsing== | ==Browsing== | ||
'''Analysis''' | |||
*Find the neighboring genes to the initially identified set | |||
Yes. EcoMap (10 kb neighboring genes) | |||
*Find/design primers for a certain gene | |||
No. | |||
*Find all the clones/KOs for those genes | |||
Yes. Link to CGSC and GenoBase | |||
*Find commonalities in function in the genes that are up or down-regulated in a given experiment | |||
No. | |||
*Find genes with similar behavior across sets of different experiments (see Hughes et al 2000) | |||
No. | |||
*Given a gene name, find all the available info about this gene (motif, clones, mutants and relevant construction information, e.g., for making the mutants or the clones) | |||
No. | |||
*For a gene, segment of DNA, operon/regulons, pathway , find all the available information | |||
No. | |||
==Searching== | ==Searching== | ||
Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene. | Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene. | ||
Revision as of 03:37, 21 June 2006
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| EcoGene | |
| Who: | proprietor |
| What: | short description |
| Where: | EcoGene |
| Updates | |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About EcoGene
Ecogene contains genomic and proteomic information about E.coli K12 MG1655.
Using EcoGene
Browsing
Analysis
- Find the neighboring genes to the initially identified set
Yes. EcoMap (10 kb neighboring genes)
- Find/design primers for a certain gene
No.
- Find all the clones/KOs for those genes
Yes. Link to CGSC and GenoBase
- Find commonalities in function in the genes that are up or down-regulated in a given experiment
No.
- Find genes with similar behavior across sets of different experiments (see Hughes et al 2000)
No.
- Given a gene name, find all the available info about this gene (motif, clones, mutants and relevant construction information, e.g., for making the mutants or the clones)
No.
- For a gene, segment of DNA, operon/regulons, pathway , find all the available information
No.
Searching
Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene.
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
Trackbacks
This feature is not yet functional
- $4$5: [$2 $1]
References
Rudd, K.E., EcoGene: a genome sequence database for Escherichia coli K-12, Nucleic Acids Res., 28:60-64, 2000
External Links
Discussion of EcoGene on other websites
| Input | Output |
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| Title, author, or reference ID | Title, authors, year, journal, vol, pages, Pudmed ID, Gene Links |
| Enzyme(s) and Genomic Adress | Restriction Map |