EcoGene: Difference between revisions
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==Searching== | ==Searching== | ||
Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene. | Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene. | ||
{| {{Prettytable}} | |||
| width='25%' | '''Input''' | |||
| width='40%' | '''Output''' | |||
|- | |||
| width='25%' | | |||
*Gene Name (DNA, RNA, or pseudo gene) | |||
*Synonym | |||
*Gene Product | |||
*EcoGene number (EG) | |||
*ECK number | |||
*SWISS-PROT number | |||
*Genbank number (gi) | |||
*Blattner lab number (b) | |||
*CGSC number | |||
*Genomic Address | |||
*Gene Description | |||
| width='40%' | | |||
*Primary Gene Name | |||
*EG number | |||
*ECK number | |||
*b number | |||
*Sequence | |||
*Gene Name Mnemonic | |||
*Alternate Gene Symbols | |||
*Sequence | |||
*Description | |||
*Protein Sequence | |||
*Protein length and MW | |||
*Gene Quality | |||
*Genomic Address (right end, left end, direction, and minute(%)) | |||
*EcoMap (10 kb neighbor genes) | |||
*Link out | |||
**Resources (AmiGO, CMR, COG, ColiBASE, Colibri, Doodle, ECCE, ECDC, EchoBASE, EcoCyc, GenBank, GenExpDB, GenomeReviews, GenProtEC, GTOP, KEGG, ModBase, NiceZyme, pfam, ProDom, ProtoNet, SWISS-2D, TF Binding Sites, TIGR-CMR, TIGRHmm, Uniprot) | |||
**ASAP | |||
**CGSC | |||
**GenoBase | |||
**RegulonDB | |||
**SWISS-PROT | |||
**PDB Links | |||
|- | |||
|Title, author, or reference ID | |||
|Title, authors, year, journal, vol, pages, Pudmed ID, Gene Links | |||
|- | |||
|Enzyme(s) and Genomic Adress | |||
|Restriction Map | |||
|- | |||
==Usage examples== | ==Usage examples== | ||
Revision as of 03:25, 21 June 2006
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| EcoGene | |
| Who: | proprietor |
| What: | short description |
| Where: | EcoGene |
| Updates | |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About EcoGene
Ecogene contains genomic and proteomic information about E.coli K12 MG1655.
Using EcoGene
Browsing
Searching
Once you type in your gene of interest, Ecogene brings up several tidbits of information about that gene including, but not limited to synonyms and other identifiers, the gene name mnemonics (which are good to know), functions, and genomic location. Also, Ecogene also allows you to view other ORFs within a set distance from your gene. You can also get DNA and protein sequences and MW. A unique aspect of this database is that you also get a bibliography of the gene.
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
Trackbacks
This feature is not yet functional
- $4$5: [$2 $1]
References
Rudd, K.E., EcoGene: a genome sequence database for Escherichia coli K-12, Nucleic Acids Res., 28:60-64, 2000
External Links
Discussion of EcoGene on other websites
| Input | Output |
|
|
| Title, author, or reference ID | Title, authors, year, journal, vol, pages, Pudmed ID, Gene Links |
| Enzyme(s) and Genomic Adress | Restriction Map |