idnD:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Newer edit →
imported>WikiEntryBot
Automated import of articles
 
imported>WikiEntryBot
Automated import of articles
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|idnD}}{{Tab|Gene|idnD}}{{Tab|Gene Product(s)|idnD}}{{Tab On|Expression|idnD}}{{Tab|Evolution|idnD}}{{Tab|On One Page|idnD}}{{TabsBottom}}
{{Tab|Quickview|idnD}}{{Tab|Gene|idnD}}{{Tab|Gene Product(s)|idnD}}{{Tab On|Expression|idnD}}{{Tab|Evolution|idnD}}{{Tab|On One Page|idnD}}{{TabsBottom}}
Line 13: Line 22:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>[[Category:Txn_unit:idnDOTR]]
[[Category:Txn_unit:idnDOTR]]
</noinclude>
==Overview==
==Overview==
{{Expression_overview_placeholder}}
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
<protect>
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
|<!--box uid=421aa90e079fa326b6494f812ad13e79..O46a060f810e2a-->
|<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.X46ab8cf588cdd-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='85247'  
{|class = 'sortable' {{Prettytable}} id='206195'  
|- {{table heading style}}
|- {{table heading style}}
!Transcription unit(s)
!Transcription unit(s)
Line 29: Line 40:
[[:Category:Txn_unit:idnDOTR|idnDOTR]]  
[[:Category:Txn_unit:idnDOTR|idnDOTR]]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O46a060f810e2a&page=&pagename={{FULLPAGENAMEE}} edit table]
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.X46ab8cf588cdd&page=43584&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O46a060f810e2a-->||{{RegulonDBfig|ECK120004388.jpg|IDND}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.X46ab8cf588cdd-->||{{RegulonDBfig|ECK120004388.jpg|IDND}}
|}
|}
{{expression_transcription_help}}
{{expression_transcription_help}}
Line 39: Line 50:


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
<protect>{{GBrowseFigureByCoord|4492414|4492444|ecoli|MG1655|GenesNew+DNA}}
{{BacktoTop}}
{{Expression_translation_help}}
<protect>{{GBrowseFigureByCoord|4492409|4492449|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
{{Expression_translation_placeholder}}
{{Expression_translation_placeholder}}


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
<!--Turnover_notes--></protect>
===Notes===
{{Expression_turnover_placeholder}}
{{Expression_turnover_placeholder}}


==Experimental==
==Experimental==
{{BacktoTop}}
<protect>
<protect>
===Mutations Affecting Expression===
<big>'''Mutations Affecting Expression'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q46a060f87f3fc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf65a54a-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='85248'  
{|class = 'sortable' {{Prettytable}} id='206196'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Q46a060f87f3fc&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf65a54a&page=43584&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Q46a060f87f3fc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf65a54a-->
{{Expression_allele_table_help}}
{{Expression_allele_table_help}}
===Expression Studies===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a060f8a9023-->
<big>'''Expression Studies'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.M46ab8cf6c874e-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='85249'  
{|class = 'sortable' {{Prettytable}} id='206197'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Reference!!Notes
!Type!!Reference!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..U46a060f8a9023&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.M46ab8cf6c874e&page=43584&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..U46a060f8a9023-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.M46ab8cf6c874e-->
{{Expression_studies_table_help}}
{{Expression_studies_table_help}}
===Expression Resources===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a060f8d2af1-->
<big>'''Expression Resources'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf743cec-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='85250'  
{|class = 'sortable' {{Prettytable}} id='206198'  
|- {{table heading style}}
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..J46a060f8d2af1&page=&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf743cec&page=43584&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a060f8d2af1-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.R46ab8cf743cec-->
{{Expression_resource_table_help}}
{{Expression_resource_table_help}}
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
Line 86: Line 104:




==Accessions Related to idnD Expression==
==Accessions Related to ''idnD'' Expression==
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a060f909f87-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.T46ab8cf7b588e-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='85251'  
{|class = 'sortable' {{Prettytable}} id='206199'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!Database!!Accession!!Notes
Line 121: Line 140:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..W46a060f909f87&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.T46ab8cf7b588e&page=43584&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a060f909f87-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.T46ab8cf7b588e-->
{{Expression_accessions_table_help}}
{{Expression_accessions_table_help}}
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{EXPRESSION_ACCESSIONS_NOTES}}
 


==Links==
==Links==
 
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.N46a7e16687495-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='107309'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.43584.N46a7e16687495&page=43584&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.43584.N46a7e16687495-->
{{Links_help}}
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references/>
__NOTOC__
__NOTOC__
</noinclude>
</noinclude>

Revision as of 18:37, 28 July 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

[back to top]


Transcription unit(s)

idnDOTR

edit table
Figure courtesy of RegulonDB

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


gbrowse_img.php?coord=4492409..4492449&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression

Allele Name Mutation Phenotype Reference
edit table

See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Expression Studies

Type Reference Notes
edit table

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Expression Resources

Resource Name Resource Type Description Source Notes
edit table

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. <protect>

Notes

Accessions Related to idnD Expression

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7893

EchoBASE (EcoliWiki Page)

EchoBASE:EB2430

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4267

EcoGene (EcoliWiki Page)

EcoGene:EG12541

edit table

See Help:Expression_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=idnD:Expression&oldid=176750"