Paralogs: Difference between revisions
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Table edited by Siegele via TableEdit |
Table edited by Siegele via TableEdit |
||
| Line 22: | Line 22: | ||
2e-63 | 2e-63 | ||
| | | | ||
BLAST (Compositional matrix adjust.) | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
138/368 (38%) | 138/368 (38%) | ||
| Line 39: | Line 41: | ||
6e-41 | 6e-41 | ||
| | | | ||
BLAST ( | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
95/284 (33%) | 95/284 (33%) | ||
| Line 56: | Line 60: | ||
0.008 | 0.008 | ||
| | | | ||
BLAST ( | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
46/204 (23%) | 46/204 (23%) | ||
Revision as of 18:20, 28 April 2017
Manually curated list of paralogous proteins in the E. coli K-12 genome. IN PROGRESS
| Gene | Paralog | Score | E value | Method | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|
|
ubiF |
ubiI |
208 bits (530) |
2e-63 |
BLAST (Compositional matrix adjust.) |
138/368 (38%) |
201/368 (55%) |
5/368 (1%) |
|
ubiF |
ubiH |
148 bits (373) |
6e-41 |
BLAST (Compositional matrix adjust.) |
95/284 (33%) |
138/284 (49%) |
1/284 (0%) |
|
ubiF |
mhpA |
35.0 bits (79) |
0.008 |
BLAST (Compositional matrix adjust.) |
46/204 (23%) |
78/204 (38%) |
26/204 (13%) |