racR:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1354, b1356, JW1351, ydaR, rarC''<ref name='LIB:Riley_2006'/>
''ECK1354, b1356, JW1351, ydaR, rarC''<ref name='LIB:Riley_2006'/>, cohR''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RacR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RarC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RacR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RarC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cohR, ECK1354, JW1351, ydaR, b1356''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=racR&s=search PortEco search(racR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=racR&loc=MG1655:1418265..1417789,W3110:1421955..1421479,DH10B:1507661..1507185,BW2952:1309848..1310324 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1309848&end=1310324&gene=racR&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=racR+AND+escherichia+coli Pubmed(racR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=racR Textpresso(racR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=racR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6680]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003275&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=racR&loc=MG1655%3A1418265..1417789,W3110%3A1421955..1421479,DH10B%3A1507661..1507185,BW2952%3A1309848..1310324]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1309848&end=1310324&gene=racR&aa=mlsgkdlgraieqainkkiasgsvkskaevarhfkvqppsiydwikkgsiskdklpelwrffsdvvgpehwglneypiptptnsdtkselldinnlyqaasdeiraivafllsgnatepdwvdhdvrayiaamemkvgkylkaleserksqnitktgt]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=racR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=racR]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

racR

Gene Synonym(s)

ECK1354, b1356, JW1351, ydaR, rarC[1], cohR

Product Desc.

hypothetical protein[2]; hypothetical protein; predicted DNA-binding transcriptional regulator[3]

Rac prophage repressor, cI-like[4]

Product Synonyms(s)

Rac prophage; predicted DNA-binding transcriptional regulator[1], B1356[2][1], RacR[2][1], YdaR[2][1], RarC[2][1] , cohR, ECK1354, JW1351, ydaR, b1356

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): racR[2]

Regulation/Activity
Quick Links



        

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Notes

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racR encodes a function repressor of the Rac prophage, personal communications, A.J. Clark, February, 1994, (preliminary results), and June, 1998. Rac integrase and repressor function and the Rac prophage can be induced to excise from the E. coli chromosome, but does not form viable virions. racR was identified in a personal communication of unpublished DNA sequence (2527 bp) and annotation from A.J. Clark, H. Samra, J. Li, C.C. Chu, C.S. Laufer and J.B. Hays, November, 1993; revised June, 1996.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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