phnD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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phosphonate/organophosphate ester transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B4105<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Phn<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PsiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''phosphonate/organophosphate ester transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B4105<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Phn<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PsiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4098, JW4066, psiD, b4105''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=phnD&s=search PortEco search(phnD)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=phnD&loc=MG1655:4322375..4321359,W3110:4329030..4328014,REL606:4303166..4302150,DH10B:4422737..4421721,BW2952:4260094..4261110 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4260094&end=4261110&gene=phnD&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=phnD+AND+escherichia+coli Pubmed(phnD)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=phnD Textpresso(phnD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=phnD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10714]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000706&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=phnD&loc=MG1655%3A4322375..4321359,W3110%3A4329030..4328014,REL606%3A4303166..4302150,DH10B%3A4422737..4421721,BW2952%3A4260094..4261110]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4260094&end=4261110&gene=phnD&aa=mnakiiaslaftsmfslstllspahaeeqekalnfgiistesqqnlkpqwtpflqdmekklgvkvnaffapdyagiiqgmrfnkvdiawygnlsameavdrangqvfaqtvaadgspgywsvlivnkdspinnlndllakrkdltfgngdpnstsgflvpgyyvfaknnisasdfkrtvnaghetnalavankqvdvatnntenldklktsapeklkelkviwksplipgdpivwrknlsettkdkiydffmnygktpeekavlerlgwapfrassdlqlvpirqlalfkemqgvksnkglneqdklaktteiqaqlddldrlnnalsamssvskavq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=phnD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=phnD]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

phnD

Gene Synonym(s)

ECK4098, b4105, JW4066, psiD, phn[1]

Product Desc.

PhnD[2][3];

Component of alkylphosphonate ABC transporter[2][3]

Phosphonate uptake, periplasmic binding protein; ABC transporter[4]

Product Synonyms(s)

phosphonate/organophosphate ester transporter subunit[1], periplasmic binding component of ABC superfamily[1], B4105[2][1], Phn[2][1], PsiD[2][1], PhnD[2][1] , ECK4098, JW4066, psiD, b4105

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): phnCDEEFGHIJKLMNOP[2], OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Phosphonate utilization is cryptic in K-12. PhnD binds 2-aminoethylphosphonate and other phosphonates. First 26 aa are predicted to be a type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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