rapA:Quickview: Difference between revisions
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{| id="S49aee8a65efe3" class=" tableEdit New_Quickview_Table" | {| id="S49aee8a65efe3" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0060, b0059, JW0058, rapA, yabA'', hepA<ref name='LIB:Riley_2006'/> | ''ECK0060, b0059, JW0058, rapA, yabA'', hepA<ref name='LIB:Riley_2006'/>, hepA, yabA'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)<ref name='LIB:Riley_2006'/>, B0059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)<ref name='LIB:Riley_2006'/>, B0059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0060, hepA, JW0058, yabA, b0059'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString=hepA&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hepA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11083]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001071&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hepA&loc=MG1655%3A63264..60358,W3110%3A63264..60358,DH10B%3A62378..60358,REL606%3A66068..63162,BW2952%3A60358..63264]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=60358&end=63264&gene=hepA&aa=mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdtitshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqidrmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevglgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhdaynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieqlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknyrpvadavamllagnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrntrngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdnatwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsiierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrigqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqtegfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamnlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwehplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpvrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksaralidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalrlivvthq]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hepA+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hepA]] | ||
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Latest revision as of 21:49, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
rapA |
|---|---|
| Gene Synonym(s) |
ECK0060, b0059, JW0058, rapA, yabA, hepA[1], hepA, yabA |
| Product Desc. |
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor[2][3] RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase[4] |
| Product Synonyms(s) |
RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)[1], B0059[2][1], YabA[2][1], RapA[2][1], RapA[2][1] , ECK0060, hepA, JW0058, yabA, b0059 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).[4]
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.