cdgR:Quickview: Difference between revisions
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m moved ydiV:Quickview to cdgR:Quickview: July 2011 Gene-Name Updates |
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!align=left {{table_heading_style}} |Standard Name | !align=left {{table_heading_style}} |Standard Name | ||
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'' | ''cdgR'' | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1705, b1707, JW1697''<ref name='LIB:Riley_2006'/> | ''ECK1705, b1707, JW1697''<ref name='LIB:Riley_2006'/>, ydiV'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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conserved protein<ref name='LIB:Riley_2006'/>, B1707<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''conserved protein<ref name='LIB:Riley_2006'/>, B1707<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , CdgR'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString= | [http://porteco.org/AjaxSearch.jsp?searchString=cdgR&s=search PortEco search(cdgR)] [http://ecoliwiki.net/tools/display_dna.php?gene=cdgR&loc=MG1655:1790044..1789331,W3110:1793734..1793021,DH10B:1880615..1879902,REL606:1769117..1768575,BW2952:1681390..1682103 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1681390&end=1682103&gene=cdgR&aa=mkiflenlyhsdcyflpirdnqqvlvgvelithfssedgtvriptsrviaqlteeqhwqlfseqlellkscqhffiqhklfawlnltpqvatlllerdnyagellkypfiellinenyphlnegkdnrgllslsqvyplvlgnlgagnstmkavfdglftrvmldksfiqqqithrsfepfiraiqaqispccnciiaggidtaeilaqitpfdfhalqgclwpavpinqittlvqr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cdgR+AND+escherichia+coli Pubmed(cdgR)] [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cdgR Textpresso(cdgR)] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 21:19, 30 July 2011
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
cdgR |
|---|---|
| Gene Synonym(s) |
ECK1705, b1707, JW1697[1], ydiV |
| Product Desc. |
Putative cyclic-di-GMP phosphodiesterase, function unknown; mutation decreases cAMP levels in an sdiA mutant; pheromone AI-1-responsive gene[4] |
| Product Synonyms(s) | |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(cdgR) DNA display Protein display Pubmed(cdgR) Textpresso(cdgR) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YdiV contains a cyclic-di-GMP phosphodiesterase EAL domain. Extracellular AI-1 stimulates ydiV expression in an SdiA-dependent manner (Zhou, 2008). An sdiA ydiV double mutant has twofold reduced cAMP levels than inhibits quorum sensing system 2 (Zhou, 2008).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.