hpf:Quickview: Difference between revisions
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[http://ecoliwiki.net/tools/display_dna.php?gene=hpf&loc=MG1655:3344195..3344482,W3110:3346028..3346315,DH10B:3441940..3442227,BW2952:3231343..3231630 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3231343&end=3231630&gene=hpf&aa=mqlnitgnnveitealrefvtakfakleqyfdrinqvyvvlkvekvthtsdatlhvnggeihasaegqdmyaaidglidklarqltkhkdklkqh Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hpf+AND+escherichia+coli Pubmed(hpf)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=hpf Textpresso(hpf)] | [http://porteco.org/AjaxSearch.jsp?searchString=hpf&s=search PortEco search(hpf)] [http://ecoliwiki.net/tools/display_dna.php?gene=hpf&loc=MG1655:3344195..3344482,W3110:3346028..3346315,DH10B:3441940..3442227,BW2952:3231343..3231630 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3231343&end=3231630&gene=hpf&aa=mqlnitgnnveitealrefvtakfakleqyfdrinqvyvvlkvekvthtsdatlhvnggeihasaegqdmyaaidglidklarqltkhkdklkqh Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hpf+AND+escherichia+coli Pubmed(hpf)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=hpf Textpresso(hpf)] | ||
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Revision as of 08:15, 27 May 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hpf |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
probable sigma-54 modulation protein[3]; predicted ribosome-associated, sigma 54 modulation protein[2] Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers[4] |
| Product Synonyms(s) |
predicted ribosome-associated, sigma 54 modulation protein[1], B3203[3][1], YhbH[3][1], Hpf[2][1] |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype |
Non-essential [5] |
| Regulation/Expression |
transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[3], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[3], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO |
| Regulation/Activity | |
| Quick Links |
PortEco search(hpf) DNA display Protein display Pubmed(hpf) Textpresso(hpf) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed