csrD:Quickview: Difference between revisions
touch QV table |
touch QV table |
||
| Line 63: | Line 63: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655:3401354..3399414,W3110:3403187..3401247,BW2952:3286562..3288502 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3286562&end=3288502&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli Pubmed(csrD)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=csrD Textpresso(csrD)] | [http://porteco.org/AjaxSearch.jsp?searchString=csrD&s=search PortEco search(csrD)] [http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655:3401354..3399414,W3110:3403187..3401247,BW2952:3286562..3288502 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3286562&end=3288502&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli Pubmed(csrD)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=csrD Textpresso(csrD)] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 07:58, 27 May 2011
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
csrD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
regulator of CsrB and CsrC decay[2][3] Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function[4] |
| Product Synonyms(s) |
conserved inner membrane protein[1], B3252[2][1], YhdA[2][1], CsrD[2][1] |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(csrD) DNA display Protein display Pubmed(csrD) Textpresso(csrD) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
CsrD has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. CsrD's role in csrB/C destabilization does not involve cyclic-di-GMP metabolism; very low level of CsrD expression; CsrD may work at substoichiometric concentrations (Suzuki, 2006). False positive lipoprotein prediction, Cys not conserved.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.