nrdR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0003690 double-stranded DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IEP])
'''Biological Process'''
* GO:0016481 negative regulation of transcription ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype

Revision as of 19:32, 2 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

nrdR

Gene Synonym(s)

ybaD, ECK0407, b0413, JW0403[1][2]

Product Desc.

conserved protein[3][2]

Nrd regulon repressor[4]

Product Synonyms(s)

conserved protein[1], B0413[3][1], YbaD[3][1], NrdR[2][1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaD[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(nrdR)    Textpresso(nrdR)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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NrdR has been shown to regulate all three Nrd systems and to bind to the predicted NrdR binding sites (Torrents, 2007). Homologous to S. coelicolor NrdR (Borovok, 2004). Predicted binding sites has been reported for the nrdAB, nrdDG, and nrdHIEF operons (Rodionova, 2005). This corresponds to putative TF Binding SIte Cluster E581 for nrdD and nrdA (Qin, 2003). Binds TrxA (Kumar, 2004). First gene in putative nrdR-ribDE-nusB operon. Also refered to as nrdR in an unpublished comparative analysis (Borovok, 2005, in GenBank AM076828).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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