bamD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''bamD'' | ''bamD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2593, b2595, JW2577, ecfD, bamD'', yfiO<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/> | ''ECK2593, b2595, JW2577, ecfD, bamD'', yfiO<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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YfiO<ref name='LIB:EcoCyc10.6'/>; YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>; | YfiO<ref name='LIB:EcoCyc10.6'/>; YfiO-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>; | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted lipoprotein<ref name='LIB:Riley_2006'/>, B2595<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcfD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamD <ref name='LIB:EcoGene'/> | predicted lipoprotein<ref name='LIB:Riley_2006'/>, B2595<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcfD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamD <ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
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!align=left {{table_heading_style}} |Regulation/Activity | |||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=bamD&loc=MG1655:2734168..2734905,W3110:2734802..2735539 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2734802&end=2735539&gene=bamD&aa=mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaanssnt Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamD+AND+escherichia+coli Pubmed(bamD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=bamD Textpresso(bamD)] | |||
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Revision as of 00:29, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
bamD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
YfiO[3]; YfiO-lipoprotein component of outer membrane protein assembly complex[4]; Component of Outer Membrane Protein Assembly Complex[4] |
| Product Synonyms(s) |
predicted lipoprotein[1], B2595[3][1], EcfD[3][1], YfiO[3][1], BamD [2] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).
The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7