fliZ:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''fliZ'' | ''fliZ'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1920, b1921, JW1906, yedH''<ref name='LIB:Riley_2006'/> | ''ECK1920, b1921, JW1906, yedH''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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possible cell-density responsive regulator of sigmaF<ref name='LIB:EcoCyc10.6'/>; predicted regulator of FliA activity<ref name='LIB:EcoCyc11.1'/> | possible cell-density responsive regulator of sigmaF<ref name='LIB:EcoCyc10.6'/>; predicted regulator of FliA activity<ref name='LIB:EcoCyc11.1'/> | ||
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RpoS antagonist, transiently in post-exponential phase; timing factor allowing motility to continue for a while during starvation; not required for normal motility<ref name='LIB:EcoGene'/> | RpoS antagonist, transiently in post-exponential phase; timing factor allowing motility to continue for a while during starvation; not required for normal motility<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted regulator of FliA activity<ref name='LIB:Riley_2006'/>, B1921<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YedH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FliZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted regulator of FliA activity<ref name='LIB:Riley_2006'/>, B1921<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YedH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FliZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0016989 sigma factor antagonist activity ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:fliAZY|fliAZY]]<ref name='LIB:EcoCyc10.6'/>, fliA | transcription unit(s): [[:Category:Txn_unit:fliAZY|fliAZY]]<ref name='LIB:EcoCyc10.6'/>, fliA | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=fliZ&loc=MG1655:1999048..1998497,W3110:2003161..2002610,DH10B:2090056..2089505 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2090056&end=2089505&gene=fliZ&aa=mphfnfdyqeflmmvqhlkrrplsrylkdfkhsqthcahcrklldritlvrdgkivnkieisrldtlldengwqteqkswaalcrfcgdlhcktqsdffdiigfkqflfeqtemspgtvreyvvrlrrlgnhlheqnisldqlqdgfldeilapwlpttstnnyrialrkyqhyqrqtctrlvqkssslpssdiy Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fliZ+AND+escherichia+coli Pubmed(fliZ)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=fliZ Textpresso(fliZ)] | |||
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Revision as of 00:29, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
fliZ |
|---|---|
| Gene Synonym(s) |
ECK1920, b1921, JW1906, yedH[1] |
| Product Desc. |
possible cell-density responsive regulator of sigmaF[2]; predicted regulator of FliA activity[3] RpoS antagonist, transiently in post-exponential phase; timing factor allowing motility to continue for a while during starvation; not required for normal motility[4] |
| Product Synonyms(s) |
predicted regulator of FliA activity[1], B1921[2][1], YedH[2][1], FliZ[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
FliZ antagonizes Crl activation of a subset of RpoS-dependent promoters, without changing RpoS levels, and thus resembles an anti-sigma factor at Crl-stimulated RpoS promoters (Pesavento, 2008). FliZ may also regulate FliA (sigma 28).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.