orn:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''orn''  
''orn''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4158, b4162, JW5740, yjeR, o204a''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK4158, b4162, JW5740, yjeR, o204a''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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oligoribonuclease monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
oligoribonuclease monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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3' to 5' oligoribonuclease; mutants accumulate oligoribonucleotides that are 2-5 residues long<ref name='LIB:EcoGene'/>
3' to 5' oligoribonuclease; mutants accumulate oligoribonucleotides that are 2-5 residues long<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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oligoribonuclease product<ref name='LIB:Riley_2006'/>, B4162 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeR product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Orn product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, O204a product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
oligoribonuclease product<ref name='LIB:Riley_2006'/>, B4162 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeR product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Orn product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, O204a product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0000175 3'-5'-exoribonuclease activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008310 single-stranded DNA specific 3'-5' exodeoxyribonuclease activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0034611 oligoribonucleotidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006401 RNA catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:orn|orn]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:orn|orn]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=orn&loc=MG1655:4389627..4390172,W3110:4396284..4396829,REL606:4369759..4370304,DH10B:4489989..4490534 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4489989&end=4490534&gene=orn&aa=mgktsmihaivdqyshcewvensmsanennliwidlemtgldperdriieiatlvtdanlnilaegptiavhqsdeqlalmddwnvrthtasglvervkastmgdreaelatleflkqwvpagkspicgnsigqdrrflfkympeleayfhyryldvstlkelarrwkpeildgftkqgthqamddiresvaelayyrehfikl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=orn+AND+escherichia+coli Pubmed(orn)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=orn Textpresso(orn)]


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Revision as of 00:28, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

orn

Gene Synonym(s)

ECK4158, b4162, JW5740, yjeR, o204a[1][2]

Product Desc.

oligoribonuclease monomer[2][3];

Component of oligoribonuclease[3]

3' to 5' oligoribonuclease; mutants accumulate oligoribonucleotides that are 2-5 residues long[4]

Product Synonyms(s)

oligoribonuclease product[1], B4162 product[2][1], YjeR product[2][1], Orn product[2][1], O204a product[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): orn[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(orn)    Textpresso(orn)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


orn has been shown to be an essential gene (Ghosh, 1999; Baba, 2007). orn has been misclassified as a non-essential gene based the presence of insertions in a on global mutagenesis (Gerdes, 2003).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=orn:Quickview&oldid=1033270"