rhaR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''rhaR'' | ''rhaR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3899, b3906, JW3877, rhaC, rhaC1''<ref name='LIB:Riley_2006'/> | ''ECK3899, b3906, JW3877, rhaC, rhaC1''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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RhaR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | RhaR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Transcriptional activator for rhaSR, AraC family<ref name='LIB:EcoGene'/> | Transcriptional activator for rhaSR, AraC family<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional activator, L-rhamnose-binding<ref name='LIB:Riley_2006'/>, B3906<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive regulator for rhaRS operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional activator, L-rhamnose-binding<ref name='LIB:Riley_2006'/>, B3906<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive regulator for rhaRS operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:rhaSR|rhaSR]]<ref name='LIB:EcoCyc10.6'/>, OP00087, rha | transcription unit(s): [[:Category:Txn_unit:rhaSR|rhaSR]]<ref name='LIB:EcoCyc10.6'/>, OP00087, rha | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=rhaR&loc=MG1655:4096579..4097517,W3110:3538125..3537187,REL606:4078038..4078976,DH10B:4196276..4197214 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4196276&end=4197214&gene=rhaR&aa=mafcnnanllnvfvrhiannqlrslaevatvahqlkllkddffasdqqavavadrypqdvfaehthdfcelvivwrgnglhvlndrpyritrgdlfyihaddkhsyasvndlvlqniiycperlklnldwqgaipgfnasagqphwrlgsmgmaqarqvigqlehessqhvpfanemaellfgqlvmllnrhrytsdslpptssetlldklitrlaaslkspfaldkfcdeascservlrqqfrqqtgmtinqylrqvrvchaqyllqhsrllisdistecgfedsnyfsvvftretgmtpsqwrhlnsqkd Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rhaR+AND+escherichia+coli Pubmed(rhaR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rhaR Textpresso(rhaR)] | |||
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Revision as of 00:24, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
rhaR |
|---|---|
| Gene Synonym(s) |
ECK3899, b3906, JW3877, rhaC, rhaC1[1] |
| Product Desc. |
RhaR transcriptional activator[2][3] Transcriptional activator for rhaSR, AraC family[4] |
| Product Synonyms(s) |
DNA-binding transcriptional activator, L-rhamnose-binding[1], B3906[2][1], RhaR[2][1], positive regulator for rhaRS operon[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A GTG start codon 31 codons internal to the previously annotated start codon is predicted based on conservation with Salmonella, eliminating the overlap with rhaS, and having a better RBS (E. Pradel, personal communication, July, 2007).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.