rbn:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rbn''  
''rbn''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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ElaC<ref name='LIB:EcoCyc10.6'/>; Rbn<ref name='LIB:EcoCyc11.1'/>;  
ElaC<ref name='LIB:EcoCyc10.6'/>; Rbn<ref name='LIB:EcoCyc11.1'/>;  
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RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity<ref name='LIB:EcoGene'/>
RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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binuclear zinc phosphodiesterase<ref name='LIB:Riley_2006'/>, ZipD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnz<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2268<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcoZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ElaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
binuclear zinc phosphodiesterase<ref name='LIB:Riley_2006'/>, ZipD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnz<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2268<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcoZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ElaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0006401 RNA catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rbn&loc=MG1655:2379630..2380547,W3110:2386278..2387195,DH10B:4173866..4174738 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4173866&end=4174738&gene=rbn&aa=mkrdelmeliflgtsagvptrtrnvtaillnlqhptqsglwlfdcgegtqhqllhtafnpgkldkifishlhgdhlfglpgllcsrsmsgiiqpltiygpqgirefvetalrisgswtdypleiveigageilddglrkvtayplehplecygyrieehdkpgalnaqalkaagvppgplfqelkagktitledgrqingadylaapvpgkalaifgdtgpcdaaldlakgvdvmvheatlditmeakansrghsstrqaatlareagvgkliithvssryddkgcqhllrecrsifpatelandftvfnv Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rbn+AND+escherichia+coli Pubmed(rbn)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rbn Textpresso(rbn)]


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Revision as of 00:22, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rbn

Gene Synonym(s)

elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD[1][2]

Product Desc.

ElaC[3]; Rbn[2];

Component of RNase BN[2]

RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity[4]

Product Synonyms(s)

binuclear zinc phosphodiesterase[1], ZipD[3][1], Rnz[3][1], B2268[3][1], EcoZ[3][1], ElaC[3][1]

Function from GO

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): elaC[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rbn)    Textpresso(rbn)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


elaC is renamed rbn. The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene [not clear this is correct]. Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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