pyrF:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''pyrF''  
''pyrF''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1276, b1281, JW1273, URA-3''<ref name='LIB:Riley_2006'/>
''ECK1276, b1281, JW1273, URA-3''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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PyrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
PyrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Orotidine-5'-phosphate decarboxylase<ref name='LIB:EcoGene'/>
Orotidine-5'-phosphate decarboxylase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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orotidine-5'-phosphate decarboxylase<ref name='LIB:Riley_2006'/>, B1281<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PyrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
orotidine-5'-phosphate decarboxylase<ref name='LIB:Riley_2006'/>, B1281<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PyrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0004590 orotidine-5'-phosphate decarboxylase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016831 carboxy-lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0015949 nucleobase, nucleoside and nucleotide interconversion ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pyrF|pyrF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pyrF|pyrF]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=pyrF&loc=MG1655:1339945..1340682,W3110:1343635..1344372,DH10B:1429341..1430078,REL606:1340292..1341029 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1340292&end=1341029&gene=pyrF&aa=mtltassssravtnspvvvaldyhnrddalafvdkidprdcrlkvgkemftlfgpqfvrelqqrgfdifldlkfhdipntaahavaaaadlgvwmvnvhasggarmmtaarealvpfgkdaplliavtvltsmeasdlvdlgmtlspadyaerlaaltqkcgldgvvcsaqeavrfkqvfgqefklvtpgirpqgseagdqrrimtpeqalsagvdymvigrpvtqsvdpaqtlkainaslqrsa Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pyrF+AND+escherichia+coli Pubmed(pyrF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=pyrF Textpresso(pyrF)]


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Revision as of 00:22, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

pyrF

Gene Synonym(s)

ECK1276, b1281, JW1273, URA-3[1]

Product Desc.

PyrF[2][3];

Component of orotidine-5'-phosphate-decarboxylase[2][3]

Orotidine-5'-phosphate decarboxylase[4]

Product Synonyms(s)

orotidine-5'-phosphate decarboxylase[1], B1281[2][1], PyrF[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

  • GO:0015949 nucleobase, nucleoside and nucleotide interconversion (IDA)
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pyrF[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(pyrF)    Textpresso(pyrF)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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