ppdD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ppdD'' | ''ppdD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0107, b0108, JW0104''<ref name='LIB:Riley_2006'/> | ''ECK0107, b0108, JW0104''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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prepilin peptidase dependent protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | prepilin peptidase dependent protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Type IV pilin; function unknown; first 6 residues may be cleaved by prepilin peptidase to leave an N-terminal methylphenylalanine<ref name='LIB:EcoGene'/> | Type IV pilin; function unknown; first 6 residues may be cleaved by prepilin peptidase to leave an N-terminal methylphenylalanine<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted major pilin subunit<ref name='LIB:Riley_2006'/>, B0108<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PpdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted major pilin subunit<ref name='LIB:Riley_2006'/>, B0108<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PpdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hofC|hofC]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hofC|hofC]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ppdD&loc=MG1655:117549..117109,W3110:117549..117109,DH10B:91653..91213,REL606:120353..119913 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=120353&end=119913&gene=ppdD&aa=mdkqrgftlielmvvigiiailsaigipayqnylrkaaltdmlqtfvpyrtavelcalehggldtcdggsngipsptttryvsamsvakgvvsltgqeslnglsvvmtpgwdnangvtgwtrncniqsdsalqqacedvfrfddan Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ppdD+AND+escherichia+coli Pubmed(ppdD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ppdD Textpresso(ppdD)] | |||
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Revision as of 00:19, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ppdD |
|---|---|
| Gene Synonym(s) |
ECK0107, b0108, JW0104[1] |
| Product Desc. |
prepilin peptidase dependent protein[2][3] Type IV pilin; function unknown; first 6 residues may be cleaved by prepilin peptidase to leave an N-terminal methylphenylalanine[4] |
| Product Synonyms(s) | |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
ppdD has been demonstrated to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.