tomB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''tomB'' | ''tomB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0455, b0461, JW0450'', ybaJ<ref name='LIB:Riley_2006'/> | ''ECK0455, b0461, JW0450'', ybaJ<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted protein<ref name='LIB:Riley_2006'/>, B0461<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted protein<ref name='LIB:Riley_2006'/>, B0461<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0003677 DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0044010 single-species biofilm formation ([http://www.geneontology.org/GO.evidence.shtml IEP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
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!align=left {{table_heading_style}} |Regulation/Activity | |||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=tomB&loc=MG1655:479932..479558,W3110:479932..479558 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=479932&end=479558&gene=tomB&aa=mdeyspkrhdiaqlkflcetlyhdclanleesnhgwvndptsainlqlneliehiatfalnykikynednklieqideylddtfmlfssyginmqdlqkwrksgnrlfrcfvnatkenpaslsc Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tomB+AND+escherichia+coli Pubmed(tomB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tomB Textpresso(tomB)] | |||
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Revision as of 00:13, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
tomB |
|---|---|
| Gene Synonym(s) |
ECK0455, b0461, JW0450, ybaJ[1] |
| Product Desc. |
Identified initially as upregulated 37-fold in biofilms[4] and shown to influence biofilm formation[5]. Toxin overexpression modulator: antitoxin for toxin Hha[6]. |
| Product Synonyms(s) | |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Ren, D et al. (2004) Gene expression in Escherichia coli biofilms. Appl. Microbiol. Biotechnol. 64 515-24 PubMed
- ↑ Barrios, AF et al. (2006) Hha, YbaJ, and OmpA regulate Escherichia coli K12 biofilm formation and conjugation plasmids abolish motility. Biotechnol. Bioeng. 93 188-200 PubMed
- ↑ García-Contreras, R et al. (2008) Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes. PLoS ONE 3 e2394 PubMed