ahpF:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ahpF''  
''ahpF''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0600, b0606, JW0599''<ref name='LIB:Riley_2006'/>
''ECK0600, b0606, JW0599''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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AhpF component<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
AhpF component<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Alkyl hydroperoxide reductase, subunit F; NAD(P)H:peroxiredoxin oxidoreductase, reduces AhpC; contains one FAD/monomer<ref name='LIB:EcoGene'/>
Alkyl hydroperoxide reductase, subunit F; NAD(P)H:peroxiredoxin oxidoreductase, reduces AhpC; contains one FAD/monomer<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding<ref name='LIB:Riley_2006'/>, B0606<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AhpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, alkyl hydroperoxide reductase, F52a subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding<ref name='LIB:Riley_2006'/>, B0606<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AhpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, alkyl hydroperoxide reductase, F52a subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
'''Cellular Component'''
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ahpF|ahpF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ahpCF|ahpCF]]<ref name='LIB:EcoCyc10.6'/>, OP00101, ahpC  
transcription unit(s): [[:Category:Txn_unit:ahpF|ahpF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ahpCF|ahpCF]]<ref name='LIB:EcoCyc10.6'/>, OP00101, ahpC  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ahpF&loc=MG1655:638976..640541,W3110:638976..640541,DH10B:578308..579873,DH10B:691568..693133,REL606:621804..623369 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=621804&end=623369&gene=ahpF&aa=mmmfkaqeinmldtnmktqlkaylekltkpveliatlddsaksaeikellaeiaelsdkvtfkednslpvrkpsflitnpgsnqgprfagsplgheftslvlallwtgghpskeaqslleqirhidgdfefetyyslschncpdvvqalnlmsvlnprikhtaidggtfqneitdrnvmgvpavfvngkefgqgrmtlteivakidtgaekraaeelnkrdaydvlivgsgpagaaaaiysarkgirtglmgerfggqildtvdienyisvpktegqklagalkvhvdeydvdvidsqsasklipaavegglhqietasgavlkarsiivatgakwrnmnvpgedqyrtkgvtycphcdgplfkgkrvavigggnsgveaaidlagivehvtllefapemkadqvlqdklrslknvdiilnaqttevkgdgskvvgleyrdrvsgdihnielagifvqigllpntnwlegavernrmgeiiidakcetnvkgvfaagdcttvpykqiiiatgegakaslsafdylirtkta Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ahpF+AND+escherichia+coli Pubmed(ahpF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ahpF Textpresso(ahpF)]


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Revision as of 00:12, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ahpF

Gene Synonym(s)

ECK0600, b0606, JW0599[1]

Product Desc.

AhpF component[2][3];

Component of alkylhydroperoxide reductase[3]

Alkyl hydroperoxide reductase, subunit F; NAD(P)H:peroxiredoxin oxidoreductase, reduces AhpC; contains one FAD/monomer[4]

Product Synonyms(s)

alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding[1], B0606[2][1], AhpF[2][1], alkyl hydroperoxide reductase, F52a subunit[2][1]

Function from GO

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ahpF[2], ahpCF[2], OP00101, ahpC

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ahpF)    Textpresso(ahpF)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The native AhpF from Salmonella has been N-terminally sequenced (Jacobson et al, 1989), supporting the choice of this alternate initiation codon in E. coli by inference.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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