cmoA:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''cmoA'' | ''cmoA'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''yecO, ECK1871, b1870, JW1859''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ''yecO, ECK1871, b1870, JW1859''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
putative methyltransferase<ref name='LIB:EcoCyc10.6'/>; predicted methyltransferase<ref name='LIB:EcoCyc11.1'/> | putative methyltransferase<ref name='LIB:EcoCyc10.6'/>; predicted methyltransferase<ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Probable tRNA(mcmo5U34)methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | Probable tRNA(mcmo5U34)methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
predicted methyltransferase<ref name='LIB:Riley_2006'/>, YecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1870<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmoA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>, CmoB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | predicted methyltransferase<ref name='LIB:Riley_2006'/>, YecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1870<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmoA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>, CmoB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:yecN|yecN]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yecN|yecN]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=cmoA&loc=MG1655:1950726..1951469,W3110:1954416..1955159,REL606:1931472..1932215 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1931472&end=1932215&gene=cmoA&aa=mshrdtlfsapiarlgdwtfdervaevfpdmiqrsvpgysniismigmlaerfvqpgtqvydlgcslgaatlsvrrnihhdnckiiaidnspamiercrrhidaykaptpvdviegdirdiaienasmvvlnftlqflepserqalldkiyqglnpggalvlsekfsfedakvgellfnmhhdfkrangyseleisqkrsmlenvmltdsvethkarlhnagfehselwfqcfnfgslvalkaedaa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cmoA+AND+escherichia+coli Pubmed(cmoA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=cmoA Textpresso(cmoA)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:07, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
cmoA |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
putative methyltransferase[3]; predicted methyltransferase[2] Probable tRNA(mcmo5U34)methyltransferase, SAM-dependent[4] |
| Product Synonyms(s) |
predicted methyltransferase[1], YecO[3][1], B1870[3][1], CmoA[2][1], CmoB[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
CmoA catalyzes an intermediate step(s) in tRNA(cmo5U34) and tRNA(mcmo5U34) synthesis that forms uridine-5-oxyacetic acid (cmo5U) and uridine-5-oxyacetic acid methyl ester (mcmo5U) in tRNA. The cmoA ortholog is functionally characterized in S. typhimurium. YecO is paralogous to YgdE and FtsJ. otherPDB (H. influenzae): 1IM8. Modeling of 1IM8 suggests substrate might be a benzoic acid derivative, possibly consistent with a chorismic acid requirement for the synthesis of cmo(5)U34.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.