csrD:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''csrD'' | ''csrD'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yhdA, ECK3240, b3252, JW3221''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
regulator of CsrB and CsrC decay<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | regulator of CsrB and CsrC decay<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function<ref name='LIB:EcoGene'/> | Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3252<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsrD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:yhdA|yhdA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yhdA|yhdA]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=csrD&loc=MG1655:3401354..3399414,W3110:3403187..3401247 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3403187&end=3401247&gene=csrD&aa=mrlttkfsafvtlltgltifvtllgcslsfynaiqykfshrvqavataidthlvsndfsvlrpqitelmmsadivrvdllhgdkqvytlarngsyrpvgssdlfrelsvplikhpgmslrlvyqdpmgnyfhslmttapltgaigfiivmlflavrwlqrqlagqelletratrilngergsnvlgtiyewpprtssaldtllreiqnareqhsrldtlirsyaaqdvktglnnrlffdnqlatlledqekvgthgivmmirlpdfnmlsdtwghsqveeqfftltnllstfmmrypgallaryhrsdfaallphrtlkeaesiagqlikavdtlpnnkmldrddmihigicawrsgqdteqvmehaesatrnaglqggnswaiyddslpekgrgnvrwrtlieqmlsrggprlyqkpavtregqvhhrelmcrifdgneevssaeympmvlqfglseeydrlqisrlipllrywpeenlaiqvtveslirprfqrwlrdtlmqceksqrkriiielaeadvgqhisrlqpvirlvnalgvrvavnqagltlvstswikelnvellklhpglvrniekrtenqllvqslveacsgtstqvyatgvrsrsewqtliqrgvtggqgdffassqpldtnvkkysqrysv Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csrD+AND+escherichia+coli Pubmed(csrD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=csrD Textpresso(csrD)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:06, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
csrD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
regulator of CsrB and CsrC decay[2][3] Targets csrB/C sRNAs for degradation by RNase E; carbon flux regulator; mechanism unknown; indirectly affects CsrA function[4] |
| Product Synonyms(s) |
conserved inner membrane protein[1], B3252[2][1], YhdA[2][1], CsrD[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
CsrD has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. CsrD's role in csrB/C destabilization does not involve cyclic-di-GMP metabolism; very low level of CsrD expression; CsrD may work at substoichiometric concentrations (Suzuki, 2006). False positive lipoprotein prediction, Cys not conserved.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.