deoC:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''deoC''  
''deoC''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4373, b4381, JW4344, dra, thyR, tlr''<ref name='LIB:Riley_2006'/>
''ECK4373, b4381, JW4344, dra, thyR, tlr''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DEOXYRIBOSE-P-ALD-
DEOXYRIBOSE-P-ALD-
2-deoxy-D-ribose 5-phosphate aldolase (DERA); deoxyriboaldolase; binds selenium<ref name='LIB:EcoGene'/>
2-deoxy-D-ribose 5-phosphate aldolase (DERA); deoxyriboaldolase; binds selenium<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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2-deoxyribose-5-phosphate aldolase, NAD(P)-linked<ref name='LIB:Riley_2006'/>, B4381<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tlr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dra<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThyR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
2-deoxyribose-5-phosphate aldolase, NAD(P)-linked<ref name='LIB:Riley_2006'/>, B4381<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tlr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dra<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThyR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Cellular Component'''
* GO:0005624 membrane fraction ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005739 mitochondrion ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0015949 nucleobase, nucleoside and nucleotide interconversion ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009264 deoxyribonucleotide catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0016052 carbohydrate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Molecular Function'''
* GO:0016829 lyase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004139 deoxyribose-phosphate aldolase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
transcription unit(s): [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=deoC&loc=MG1655:4615346..4616125,W3110:4622003..4622782,REL606:4606557..4607336,DH10B:4661808..4662587 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4661808&end=4662587&gene=deoC&aa=mtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarktlkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfdlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpesarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgassllasllkalghgdgksassy Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deoC+AND+escherichia+coli Pubmed(deoC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=deoC Textpresso(deoC)]


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Revision as of 00:04, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

deoC

Gene Synonym(s)

ECK4373, b4381, JW4344, dra, thyR, tlr[1]

Product Desc.

DEOXYRIBOSE-P-ALD- 2-deoxy-D-ribose 5-phosphate aldolase (DERA); deoxyriboaldolase; binds selenium[2]

Product Synonyms(s)

2-deoxyribose-5-phosphate aldolase, NAD(P)-linked[1], B4381[3][1], Tlr[3][1], Dra[3][1], ThyR[3][1], DeoC[3][1]

Function from GO

Cellular Component

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): deoCABD[3], OP00024, deo

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(deoC)    Textpresso(deoC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Half of the native protein still retains the initial Met.[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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