deoD:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''deoD''  
''deoD''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4376, b4384, JW4347, pup''<ref name='LIB:Riley_2006'/>
''ECK4376, b4384, JW4347, pup''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DeoD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
DeoD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Purine nucleoside phosphorylase; PNP; hexamer<ref name='LIB:EcoGene'/>
Purine nucleoside phosphorylase; PNP; hexamer<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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purine-nucleoside phosphorylase product<ref name='LIB:Riley_2006'/>, B4384 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pup product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoD product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
purine-nucleoside phosphorylase product<ref name='LIB:Riley_2006'/>, B4384 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pup product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoD product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004731 purine-nucleoside phosphorylase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
'''Cellular Component'''
* GO:0005624 membrane fraction ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005739 mitochondrion ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005829 cytosol ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006152 purine nucleoside catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0019686 purine nucleoside interconversion ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:deoBD|deoBD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
transcription unit(s): [[:Category:Txn_unit:deoBD|deoBD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=deoD&loc=MG1655:4618906..4619625,W3110:4625563..4626282,REL606:4610140..4610859,DH10B:4665368..4666087 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4665368&end=4666087&gene=deoD&aa=matphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvmghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirfkdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvemeaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdke Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deoD+AND+escherichia+coli Pubmed(deoD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=deoD Textpresso(deoD)]


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Revision as of 00:04, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

deoD

Gene Synonym(s)

ECK4376, b4384, JW4347, pup[1]

Product Desc.

DeoD[2][3];

Component of DEOD-CPLX[2]

Purine nucleoside phosphorylase; PNP; hexamer[4]

Product Synonyms(s)

purine-nucleoside phosphorylase product[1], B4384 product[2][1], Pup product[2][1], DeoD product[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): deoBD[2], deoCABD[2], OP00024, deo

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(deoD)    Textpresso(deoD)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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