dgoR:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''dgoR'' | ''dgoR'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK3687, b4479, JW5627, yidW, b3695 (obsolete), b3694 (obsolete)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK3687, b4479, JW5627, yidW, b3695 (obsolete), b3694 (obsolete)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Transcriptional repressor for the dgoRKAT operon; growth on 2-keto-3-deoxygalactonate; binds D-galactonate as an inducer<ref name='LIB:EcoGene'/> | Transcriptional repressor for the dgoRKAT operon; growth on 2-keto-3-deoxygalactonate; binds D-galactonate as an inducer<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B4479<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DgoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YidW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B4479<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DgoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YidW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Biological Process''' | |||
* GO:0006355 regulation of transcription, DNA-dependent ([http://www.geneontology.org/GO.evidence.shtml ISS]) | |||
'''Molecular Function''' | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml ISS]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:dgoT|dgoT]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:dgoT|dgoT]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=dgoR&loc=MG1655:3873183..3872494,W3110:3765255..3765944,REL606:3835521..3834832,DH10B:3970767..3970078 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3970767&end=3970078&gene=dgoR&aa=mtlnktdrivitlgkqivhgkyvpgsplpaeaelceefatsrniirevfrslmakrliemkryrgafvaprnqwnyldtdvlqwvlendydprlisamsevrnlvepaiarwaaeratssdlaqiesalnemiannqdreafneadiryheavlqsvhnpvlqqlsiaisslqravfertwmgdeanmpqtlqehkalfdairhqdgdaaeqaaltmiasstrrlkeit Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dgoR+AND+escherichia+coli Pubmed(dgoR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dgoR Textpresso(dgoR)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:03, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
dgoR |
|---|---|
| Gene Synonym(s) |
ECK3687, b4479, JW5627, yidW, b3695 (obsolete), b3694 (obsolete)[1][2] |
| Product Desc. |
predicted DNA-binding transcriptional regulator[2][3] Transcriptional repressor for the dgoRKAT operon; growth on 2-keto-3-deoxygalactonate; binds D-galactonate as an inducer[4] |
| Product Synonyms(s) |
predicted DNA-binding transcriptional regulator[1], B4479[2][1], DgoR[2][1], YidW[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
DgoR is a GntR-type DNA-binding transcriptional regulator.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.