dppF:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dppF''  
''dppF''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3527, b3540, JW3509, dppE''<ref name='LIB:Riley_2006'/>
''ECK3527, b3540, JW3509, dppE''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DppF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
DppF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Dipeptide/heme transport, ATP-binding protein; also transports 5-aminolevulinic acid<ref name='LIB:EcoGene'/>
Dipeptide/heme transport, ATP-binding protein; also transports 5-aminolevulinic acid<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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dipeptide transporter<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
dipeptide transporter<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3540<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DppF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005524 ATP binding ([http://www.geneontology.org/GO.evidence.shtml ISS])
* GO:0015198 oligopeptide transporter activity ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0015421 oligopeptide-transporting ATPase activity ([http://www.geneontology.org/GO.evidence.shtml ISS])
* GO:0042936 dipeptide transporter activity ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml ISS])
* GO:0043190 ATP-binding cassette (ABC) transporter complex ([http://www.geneontology.org/GO.evidence.shtml ISS])
'''Biological Process'''
* GO:0006857 oligopeptide transport ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0042938 dipeptide transport ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dppABCDF|dppABCDF]]<ref name='LIB:EcoCyc10.6'/>, dpp, dppABCDE  
transcription unit(s): [[:Category:Txn_unit:dppABCDF|dppABCDF]]<ref name='LIB:EcoCyc10.6'/>, dpp, dppABCDE  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dppF&loc=MG1655:3700891..3699887,W3110:3937547..3938551,REL606:3633326..3632322,DH10B:3798636..3797632 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3798636&end=3797632&gene=dppF&aa=mstqeatlqqpllqaidlkkhypvkkgmfaperlvkaldgvsfnlergktlavvgesgcgkstlgrlltmiemptggelyyqgqdllkhdpqaqklrrqkiqivfqnpygslnprkkvgqileepllintslskeqrrekalsmmakvglktehydryphmfsggqrqriaiarglmldpdvviadepvsaldvsvraqvlnlmmdlqqelglsyvfishdlsvvehiadevmvmylgrcvekgtkdqifnnprhpytqallsatprlnpddrreriklsgelpsplnpppgcafnarcrrrfgpctqlqpqlkdyggqlvacfavdqdenpqr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dppF+AND+escherichia+coli Pubmed(dppF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dppF Textpresso(dppF)]


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Revision as of 00:03, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dppF

Gene Synonym(s)

ECK3527, b3540, JW3509, dppE[1]

Product Desc.

DppF[2][3];

Component of dipeptide ABC transporter[2][3]

Dipeptide/heme transport, ATP-binding protein; also transports 5-aminolevulinic acid[4]

Product Synonyms(s)

dipeptide transporter[1], ATP-binding component of ABC superfamily[1], B3540[2][1], DppE[2][1], DppF[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dppABCDF[2], dpp, dppABCDE

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dppF)    Textpresso(dppF)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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E. coli does not normally use exogeneous heme, but heme can be utilized if a foreign OM heme receptor is expressed in E. coli (Letoffe, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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