fadB:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
update QV table
Line 27: Line 27:


|-
|-
!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''fadB''  
''fadB''  
|-
|-
!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK3838, b3846, JW3822, oldB''<ref name='LIB:Riley_2006'/>
''ECK3838, b3846, JW3822, oldB''<ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
||
dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Line 43: Line 43:
Multifunctional fatty acid oxidation complex FadAB; four enzyme activities: L-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA epimerase, dodecenoyl-CoA-delta-isomerase, and small-chain-length enoyl-CoA hydratase (cronotase)<ref name='LIB:EcoGene'/>
Multifunctional fatty acid oxidation complex FadAB; four enzyme activities: L-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA epimerase, dodecenoyl-CoA-delta-isomerase, and small-chain-length enoyl-CoA hydratase (cronotase)<ref name='LIB:EcoGene'/>
|-
|-
!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase<ref name='LIB:Riley_2006'/>, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:Riley_2006'/>, B3846<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OldB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase<ref name='LIB:Riley_2006'/>, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:Riley_2006'/>, B3846<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OldB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
||
||


|-
|-
!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
 
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:fadBA|fadBA]]<ref name='LIB:EcoCyc10.6'/>, OP00303  
transcription unit(s): [[:Category:Txn_unit:fadBA|fadBA]]<ref name='LIB:EcoCyc10.6'/>, OP00303  
|-
|-
!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[http://ecoliwiki.net/tools/display_dna.php?gene=fadB&loc=MG1655:4028994..4026805,W3110:3605710..3607899,REL606:4009344..4007155,DH10B:4127914..4125725 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4127914&end=4125725&gene=fadB&aa=mlykgdtlyldwledgiaelvfdapgsvnkldtatvaslgeaigvleqqsdlkglllrsnkaafivgaditeflslflvpeeqlsqwlhfansvfnrledlpvptiaavngyalgggcecvlatdyrlatpdlriglpetklgimpgfggsvrmprmlgadsaleiiaagkdvgadqalkiglvdgvvkaeklvegakavlrqaingdldwkakrqpkleplklskieatmsftiakgmvaqtagkhypapitavktieaaarfgreealnlenksfvplahtnearalvgiflndqyvkgkakkltkdvetpkqaavlgagimgggiayqsawkgvpvvmkdindksltlgmteaakllnkqlergkidglklagvistihptldyagfdrvdivveavvenpkvkkavlaeteqkvrqdtvlasntstipiselanalerpenfcgmhffnpvhrmplveiirgekssdetiakvvawaskmgktpivvndcpgffvnrvlfpyfagfsqllrdgadfrkidkvmekqfgwpmgpaylldvvgidtahhaqavmaagfpqrmqkdyrdaidalfdanrfgqknglgfwrykedskgkpkkeedaavedllaevsqpkrdfseeeiiarmmipmvnevvrcleegiiatpaeadmalvyglgfppfhggafrwldtlgsakyldmaqqyqhlgplyevpeglrnkarhnepyyppveparpvgdlkta Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fadB+AND+escherichia+coli Pubmed(fadB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=fadB Textpresso(fadB)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 00:01, 22 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

fadB

Gene Synonym(s)

ECK3838, b3846, JW3822, oldB[1]

Product Desc.

dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase[2][3];

Component of fatty acid oxidation complex, α component[2][3]; fatty acid oxidation complex[2][3]

Multifunctional fatty acid oxidation complex FadAB; four enzyme activities: L-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA epimerase, dodecenoyl-CoA-delta-isomerase, and small-chain-length enoyl-CoA hydratase (cronotase)[4]

Product Synonyms(s)

fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase[1], 3-hydroxyacyl-CoA dehydrogenase[1], B3846[2][1], OldB[2][1], FadB[2][1]

Function from GO
Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fadBA[2], OP00303

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(fadB)    Textpresso(fadB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


FadR regulon. FadAB and FadIJ are paralogs. Binds TrxA (Kumar, 2004).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=fadB:Quickview&oldid=1031930"