frdA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''frdA''  
''frdA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4150, b4154, JW4115''<ref name='LIB:Riley_2006'/>
''ECK4150, b4154, JW4115''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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fumarate reductase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
fumarate reductase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Fumarate reductase flavoprotein subunit<ref name='LIB:EcoGene'/>
Fumarate reductase flavoprotein subunit<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit product<ref name='LIB:Riley_2006'/>, B4154 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrdA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit product<ref name='LIB:Riley_2006'/>, B4154 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrdA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0001539 ciliary or flagellar motility ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006113 fermentation ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009061 anaerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009296 flagellum assembly ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0009055 electron carrier activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050660 FAD binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:frdABCD|frdABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00030, frd  
transcription unit(s): [[:Category:Txn_unit:frdABCD|frdABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00030, frd  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=frdA&loc=MG1655:4380341..4378533,W3110:4386998..4385190,REL606:4361029..4359221,DH10B:4480703..4478895 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4480703&end=4478895&gene=frdA&aa=mqtfqadlaivgaggaglraaiaaaqanpnakialiskvypmrshtvaaeggsaavaqdhdsfeyhfhdtvaggdwlceqdvvdyfvhhcptemtqlelwgcpwsrrpdgsvnvrrfggmkiertwfaadktgfhmlhtlfqtslqfpqiqrfdehfvldilvddghvrglvamnmmegtlvqiranavvmatggagrvyryntnggivtgdgmgmalshgvplrdmefvqyhptglpgsgilmtegcrgeggilvnkngyrylqdygmgpetplgepknkymelgprdkvsqafwhewrkgntistprgdvvyldlrhlgekklherlpficelakayvgvdpvkepipvrptahytmggietdqncetrikglfavgecssvglhganrlgsnslaelvvfgrlageqateraatagngneaaieaqaagveqrlkdlvnqdggenwakirdemglameegcgiyrtpelmqktidklaelqerfkrvritdtssvfntdllytielghglnvaecmahsamarkesrgahqrldegcterddvnflkhtlafrdadgttrleysdvkittlppakrvyggeadaadkaeaankkekang Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=frdA+AND+escherichia+coli Pubmed(frdA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=frdA Textpresso(frdA)]


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Revision as of 23:58, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

frdA

Gene Synonym(s)

ECK4150, b4154, JW4115[1]

Product Desc.

fumarate reductase flavoprotein[2][3];

Component of fumarate reductase[2][3]

Fumarate reductase flavoprotein subunit[4]

Product Synonyms(s)

fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit product[1], B4154 product[2][1], FrdA product[2][1]

Function from GO

Biological Process

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): frdABCD[2], OP00030, frd

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(frdA)    Textpresso(frdA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


frdA transcription is repressed by nitrate via the NarXL system. Repression is both direct by repressing promoter activity and indirect by repressing dcuS promoter activity. HT_Cmplx15_Mem: FrdA+FrdB.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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