frmB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''frmB'' | ''frmB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0352, b0355, JW0346, yaiM''<ref name='LIB:Riley_2006'/> | ''ECK0352, b0355, JW0346, yaiM''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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<i>S</i>-formylglutathione hydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | <i>S</i>-formylglutathione hydrolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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S-formylglutathione hydrolase, formaldehyde degradation<ref name='LIB:EcoGene'/> | S-formylglutathione hydrolase, formaldehyde degradation<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted esterase<ref name='LIB:Riley_2006'/>, B0355<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted esterase<ref name='LIB:Riley_2006'/>, B0355<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:frmB|frmB]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:frmB|frmB]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=frmB&loc=MG1655:377592..376759,W3110:377592..376759,DH10B:316923..316090,REL606:350726..349893 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=350726&end=349893&gene=frmB&aa=meliekhvsfggwqnmyrhysqslkcemnvgvylppkaaneklpvlywlsgltcneqnfitksgmqryaaehniivvapdtsprgshvadadrydlgqgagfylnatqapwnehykmydyirnelpdlvmhhfpatakksisghsmgglgalvlalrnpdeyvsvsafspivspsqvpwgqqafaaylaenkdawldydpvslisqgqrvaeimvdqglsddfyaeqlrtpnlekicqemniktliryhegydhsyyfvssfigehiayhanklnmr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=frmB+AND+escherichia+coli Pubmed(frmB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=frmB Textpresso(frmB)] | |||
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Revision as of 23:58, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
frmB |
|---|---|
| Gene Synonym(s) |
ECK0352, b0355, JW0346, yaiM[1] |
| Product Desc. |
S-formylglutathione hydrolase[2][3] S-formylglutathione hydrolase, formaldehyde degradation[4] |
| Product Synonyms(s) | |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
FrmB also has p-nitrophenyl C2-C6 fatty acid ester and a-naphthyl acetate carboxylesterase activities in vitro. The frmRAB operon is negatively regulated by frmR, is induced by formaldehyde, and probably degrades formaldehyde. FrmB is 50% identical to P. denitrificans S-formylglutathione hydrolase. FrmB and YeiG are 50% identical paralogs; double mutant is formaldehyde sensitive; this may explain why an frmB single mutant did not have a formadehyde phenotype when tested on Biolog plates (Herring, 2004). The amino terminal half of FrmB is homologus to the C-terminal half of YieL. S9 peptidase family; YeiG or FrmB are not in MEROPS yet, but it has homologs.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.