frmR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''frmR'' | ''frmR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0354, b0357, JW0348, yaiN''<ref name='LIB:Riley_2006'/> | ''ECK0354, b0357, JW0348, yaiN''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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regulator protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | regulator protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Negative regulator of the frmRAB operon<ref name='LIB:EcoGene'/> | Negative regulator of the frmRAB operon<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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regulator protein that represses frmRAB operon<ref name='LIB:Riley_2006'/>, B0357<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | regulator protein that represses frmRAB operon<ref name='LIB:Riley_2006'/>, B0357<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FrmR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:frmB|frmB]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:frmB|frmB]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=frmR&loc=MG1655:379105..378830,W3110:379105..378830,DH10B:318436..318161,REL606:352238..351963 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=352238&end=351963&gene=frmR&aa=mqmmrcempstpeekkkvltrvrrirgqidalerslegdaecrailqqiaavrgaanglmaevleshiretfdrndcysrevsqsvddtielvraylk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=frmR+AND+escherichia+coli Pubmed(frmR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=frmR Textpresso(frmR)] | |||
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Revision as of 23:58, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
frmR |
|---|---|
| Gene Synonym(s) |
ECK0354, b0357, JW0348, yaiN[1] |
| Product Desc. |
Negative regulator of the frmRAB operon[4] |
| Product Synonyms(s) |
regulator protein that represses frmRAB operon[1], B0357[2][1], YaiN[2][1], FrmR[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The frmRAB operon is negatively regulated by frmR, is induced by formaldehyde, and probably degrades formaldehyde. An amber suppressor allows readthrough of frmR, adding 7 aa, which inactivates FrmR, causing stimulation of frmRAB transcription. frmR and rcnR are paralogs.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.