hcaD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hcaD'' | ''hcaD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2539, b2542, JW2526, hcaA4, yfhY, phdA''<ref name='LIB:Riley_2006'/> | ''ECK2539, b2542, JW2526, hcaA4, yfhY, phdA''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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HCAD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | HCAD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin reductase subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/> | 3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin reductase subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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phenylpropionate dioxygenase, ferredoxin reductase subunit<ref name='LIB:Riley_2006'/>, B2542<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | phenylpropionate dioxygenase, ferredoxin reductase subunit<ref name='LIB:Riley_2006'/>, B2542<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hcaD&loc=MG1655:2670069..2671271,W3110:2670703..2671905,DH10B:2761834..2763036,REL606:2592746..2593948 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2592746&end=2593948&gene=hcaD&aa=mkektiiivgggqaaamaaaslrqqgftgelhlfsderhlpyerpplsksmlledspqlqqvlpanwwqennvhlhsgvtiktlgrdtrelvltngeswhwdqlfiatgaaarplplldalgercftlrhagdaarlrevlqpersvviigagtiglelaasatqrrckvtvielaatvmgrnapppvqryllqrhqqagvrillnnaiehvvdgekveltlqsgetlqadvviygigisaneqlareanldtangivideacrtcdpaifaggdvaitrldngalhrceswenannqaqiaaaamlglplpllpppwfwsdqysdnlqfigdmrgddwlcrgnpetqkaiwfnlqngvligavtlnqgreirpirkwiqsgktfdakllidenialksl Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaD+AND+escherichia+coli Pubmed(hcaD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hcaD Textpresso(hcaD)] | |||
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Revision as of 23:53, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hcaD |
|---|---|
| Gene Synonym(s) |
ECK2539, b2542, JW2526, hcaA4, yfhY, phdA[1] |
| Product Desc. |
Component of 3-phenylpropionate dioxygenase system[2][3] 3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin reductase subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4] |
| Product Synonyms(s) |
phenylpropionate dioxygenase, ferredoxin reductase subunit[1], B2542[2][1], YfhY[2][1], PhdA[2][1], HcaD[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.