hsdS:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hsdS'' | ''hsdS'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4338, b4348, JW4311, hss, hsp, rm''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK4338, b4348, JW4311, hss, hsp, rm''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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specificity determinant for hsdM and hsdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | specificity determinant for hsdM and hsdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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Specificity determinant for HsdM and HsdR<ref name='LIB:EcoGene'/> | Specificity determinant for HsdM and HsdR<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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specificity determinant for hsdM and hsdR product<ref name='LIB:Riley_2006'/>, B4348 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hss product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hsp product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HsdS product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | specificity determinant for hsdM and hsdR product<ref name='LIB:Riley_2006'/>, B4348 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hss product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hsp product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HsdS product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hsdMS|hsdMS]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hsdMS|hsdMS]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hsdS&loc=MG1655:4579485..4578091,W3110:4586142..4584748,REL606:4559437..4558013 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4559437&end=4558013&gene=hsdS&aa=msagklpegwviapvstvttlirgvtykkeqainylkddylpliranniqngkfdttdlvfvpknlvkesqkispediviamssgsksvvgksahqhlpfecsfgafcgvlrpeklifsgfiahftksslyrnkisslsaganinnikpasfdlinipipplaeqkiiaekldtllaqvdstkarfeqipqilkrfrqavlggavngkltekwrnfepqhsvfkklnfesiltelrnglsskpnesgvghpilrissvraghvdqndirflecseselnrhklqdgdllftryngslefvgvcgllkklqhqnllypdklirarltkdalpeyieiffsspsarnammncvkttsgqkgisgkdiksqvvllppvkeqaeivrrveqlfayadtiekqvnnalarvnnltqsilakafrgeltaqwraenpdlisgensaaallekikaeraasggkkasrkks Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hsdS+AND+escherichia+coli Pubmed(hsdS)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hsdS Textpresso(hsdS)] | |||
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Revision as of 23:51, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hsdS |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
specificity determinant for hsdM and hsdR[2][3]; Component of [[:Category:Complex:EcoKI restriction-modification system|EcoKI restriction-modification system]][3] Specificity determinant for HsdM and HsdR[4] |
| Product Synonyms(s) |
specificity determinant for hsdM and hsdR product[1], B4348 product[2][1], Hss product[2][1], Hsp product[2][1], HsdS product[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The restriction-modification complex EcoKI is comprised of three polypeptide subunits coded for by the genes hsdS, hsdM, and hsdR. HsdS is the polypeptide that directly interacts with DNA through the use of two target recognition domain (TRD) sequences first isolated by Fuller-Pace and Murray.[5] HsdS recognizes and binds to the nucleotide sequence 5' AAC(N)6GTGC. Fuller-Pace and Murray determined this sequence of the TRDs in hsdS after recombining two homologous hsdS genes from a family of restriction-modification complexes.
Substitution of Trp212 to Arg alters the protein-protein interaction with HsdM, in turn effecting the DNA binding of the molecule; DNA binding in the mutant is restored by HsdR binding.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Fuller-Pace, FV & Murray, NE (1986) Two DNA recognition domains of the specificity polypeptides of a family of type I restriction enzymes. Proc. Natl. Acad. Sci. U.S.A. 83 9368-72 PubMed