lsrR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''lsrR'' | ''lsrR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ydeW, ECK1505, b1512, JW1505''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ydeW, ECK1505, b1512, JW1505''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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LcrR transcriptional repressor<ref name='LIB:EcoCyc10.6'/>; LsrR transcriptional repressor<ref name='LIB:EcoCyc11.1'/> | LcrR transcriptional repressor<ref name='LIB:EcoCyc10.6'/>; LsrR transcriptional repressor<ref name='LIB:EcoCyc11.1'/> | ||
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lsrACDBFGE operon regulator for autoinducer-2 (AI-2) uptake; induced by phospho-AI-2<ref name='LIB:EcoGene'/> | lsrACDBFGE operon regulator for autoinducer-2 (AI-2) uptake; induced by phospho-AI-2<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1512<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LsrR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, predicted DNA-binding transcriptional regulator, sorC family<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1512<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LsrR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, predicted DNA-binding transcriptional regulator, sorC family<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IEP]) | |||
'''Molecular Function''' | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IEP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ydeW|ydeW]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ydeW|ydeW]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=lsrR&loc=MG1655:1599265..1598312,W3110:1602955..1602002,DH10B:1688890..1687937 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1688890&end=1687937&gene=lsrR&aa=mtindsaiseqgmceeeqvariawfyyhdgltqseisdrlgltrlkvsrllekghqsgiirvqinsrfegcleyetqlrrqfslqhvrvipgladadvggrlgigaahmlmsllqpqqmlaigfgeatmntlqrlsgfissqqirlvtlsggvgsymtgigqlnaacsvniipaplrassadiartlknencvkdvllaaqaadvaivgigavsqqddatiirsgyisqgeqlmigrkgavgdilgyffdakgdvvtnikihneliglplsalktipvrvgvaggenkaeaiaaamkggyinalvtdqdtaaailrs Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lsrR+AND+escherichia+coli Pubmed(lsrR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lsrR Textpresso(lsrR)] | |||
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Revision as of 23:46, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
lsrR |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
LcrR transcriptional repressor[2]; LsrR transcriptional repressor[3] lsrACDBFGE operon regulator for autoinducer-2 (AI-2) uptake; induced by phospho-AI-2[4] |
| Product Synonyms(s) |
predicted DNA-binding transcriptional regulator[1], B1512[2][1], YdeW[2][1], LsrR[2][1], predicted DNA-binding transcriptional regulator, sorC family[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
LsrR is also involved in a DHAP repression of the lsr operon. LsrR is paralogous to the ribose transport regulator RbsR.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.