menF:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''menF''  
''menF''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2259, b2265, JW2260, yfbA''<ref name='LIB:Riley_2006'/>
''ECK2259, b2265, JW2260, yfbA''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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MenF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
MenF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Isochorismate synthase, menaquinone biosynthesis<ref name='LIB:EcoGene'/>
Isochorismate synthase, menaquinone biosynthesis<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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isochorismate synthase 2<ref name='LIB:Riley_2006'/>, B2265<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MenF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
isochorismate synthase 2<ref name='LIB:Riley_2006'/>, B2265<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MenF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0000287 magnesium ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008909 isochorismate synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009234 menaquinone biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:menFD-yfbB-menBCE|menFD-yfbB-menBCE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:menFD-yfbB-menBCE|menFD-yfbB-menBCE]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=menF&loc=MG1655:2378665..2377370,W3110:2385313..2384018,DH10B:2469653..2468358,REL606:2327156..2325861 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2327156&end=2325861&gene=menF&aa=mdqaqrflrqhpehadlriwglnafdpsqgnlllprlewrrcggkatlrltlfsesslqhdaiqakefiatlvsikplpglhltttreqhwpdktgwtqlielatktiaegeldkvvlaratdlhfaspvnaaammaasrrlnlncyhfymafdgenaflgssperlwrrrdkalrtealagtvannpddkqaqqlgewlmaddknqrenmlvvedicqrlqadtqtldvlppqvlrlrkvqhlrrciwtslnkaddviclhqlqptaavaglprdlarqfiarhepftrewyagsagylslqqsefcvslrsakisgnvvrlyagagivrgsdpeqewqeidnkaaglrtllqme Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=menF+AND+escherichia+coli Pubmed(menF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=menF Textpresso(menF)]


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Revision as of 23:44, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

menF

Gene Synonym(s)

ECK2259, b2265, JW2260, yfbA[1]

Product Desc.

MenF[2][3];

Component of isochorismate synthase, menaquinone-specific[2]; isochorismate synthase 2[3]

Isochorismate synthase, menaquinone biosynthesis[4]

Product Synonyms(s)

isochorismate synthase 2[1], B2265[2][1], YfbA[2][1], MenF[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): menFD-yfbB-menBCE[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(menF)    Textpresso(menF)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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