mrdA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''mrdA''  
''mrdA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0628, b0635, JW0630, pbpA''<ref name='LIB:Riley_2006'/>
''ECK0628, b0635, JW0630, pbpA''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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cell shape; peptidoglycan synthetase; penicillin-binding protein 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
cell shape; peptidoglycan synthetase; penicillin-binding protein 2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Penicillin-binding protein PBP2; transpeptidase recruited by cognate SEDS protein MrdB; mecillinam resistance<ref name='LIB:EcoGene'/>
Penicillin-binding protein PBP2; transpeptidase recruited by cognate SEDS protein MrdB; mecillinam resistance<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)<ref name='LIB:Riley_2006'/>, B0635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MrdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PBP2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)<ref name='LIB:Riley_2006'/>, B0635<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PbpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MrdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PBP2<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004180 carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008144 drug binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008658 penicillin binding ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0031225 anchored to membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005886 plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0042493 response to drug ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0046677 response to antibiotic ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0008360 regulation of cell shape ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rlpA|rlpA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rlpA|rlpA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=mrdA&loc=MG1655:667440..665539,W3110:668639..666738,DH10B:606772..604871,DH10B:720032..718131,REL606:650801..648900 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=650801&end=648900&gene=mrdA&aa=mklqnsfrdytaesalfvrralvaflgillltgvlianlynlqivrftdyqtrsnenriklvpiapsrgiiydrngiplalnrtiyqiemmpekvdnvqqtldalrsvvdltdddiaafrkerarshrftsipvktnltevqvarfavnqyrfpgvevkgykrryypygsalthvigyvskindkdverlnndgklanyaathdigklgieryyedvlhgqtgyeevevnnrgrvirqlkevppqaghdiyltldlklqqyietllagsraavvvtdprtggvlalvstpsydpnlfvdgisskdysallndpntplvnratqgvyppastvkpyvavsalsagvitrnttlfdpgwwqlpgsekryrdwkkwghgrlnvtrsleesadtffyqvaydmgidrlsewmgkfgyghytgidlaeersgnmptrewkqkrfkkpwyqgdtipvgigqgywtatpiqmskalmilindgivkvphllmstaedgkqvpwvqpheppvgdihsgywelakdgmygvanrpngtahkyfasapykiaaksgtaqvfglkanetynahkiaerlrdhklmtafapynnpqvavamilenggagpavgtlmrqildhimlgdnntdlpaenpavaaaedh Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=mrdA+AND+escherichia+coli Pubmed(mrdA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=mrdA Textpresso(mrdA)]


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Revision as of 23:42, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

mrdA

Gene Synonym(s)

ECK0628, b0635, JW0630, pbpA[1]

Product Desc.

cell shape; peptidoglycan synthetase; penicillin-binding protein 2[2][3]

Penicillin-binding protein PBP2; transpeptidase recruited by cognate SEDS protein MrdB; mecillinam resistance[4]

Product Synonyms(s)

transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)[1], B0635[2][1], PbpA[2][1], MrdA[2][1], PBP2[2][1]

Function from GO

Molecular Function

Cellular Component

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rlpA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(mrdA)    Textpresso(mrdA)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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