oppD:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''oppD''  
''oppD''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1240, b1246, JW1238''<ref name='LIB:Riley_2006'/>
''ECK1240, b1246, JW1238''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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OppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
OppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Oligopeptide transport, ATP-binding protein<ref name='LIB:EcoGene'/>
Oligopeptide transport, ATP-binding protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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oligopeptide transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B1246<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
oligopeptide transporter subunit<ref name='LIB:Riley_2006'/>, ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B1246<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OppD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0015640 peptidoglycan peptide transporter activity ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Biological Process'''
* GO:0015834 peptidoglycan-associated peptide transport ([http://www.geneontology.org/GO.evidence.shtml IGI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:oppABCDF|oppABCDF]]<ref name='LIB:EcoCyc10.6'/>, OP00313, oppABCD  
transcription unit(s): [[:Category:Txn_unit:oppABCDF|oppABCDF]]<ref name='LIB:EcoCyc10.6'/>, OP00313, oppABCD  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=oppD&loc=MG1655:1302778..1303791,W3110:1306468..1307481,DH10B:1343796..1344809,REL606:1302348..1303361 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1302348&end=1303361&gene=oppD&aa=msvietatvplaqqqadallnvkdlrvtfstpdgdvtavndlnfslragetlgivgesgsgksqtafalmgllaangriggsatfngreilnlpehelnklraeqismifqdpmtslnpymrvgeqlmevlmlhknmskaeafeesvrmldavkmpearkrmkmyphefsggmrqrvmiamallcrpklliadepttaldvtvqaqimtllnelkrefntaiimithdlvvvagicdkvlvmyagrtmeygnardvfyqpvhpysigllnavprldaegetmltipgnppnllrlpkgcpfqprcphameicssappleeftpgrlracfkpveell Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=oppD+AND+escherichia+coli Pubmed(oppD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=oppD Textpresso(oppD)]


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Revision as of 23:37, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

oppD

Gene Synonym(s)

ECK1240, b1246, JW1238[1]

Product Desc.

OppD[2][3];

Component of oligopeptide ABC transporter[2][3]

Oligopeptide transport, ATP-binding protein[4]

Product Synonyms(s)

oligopeptide transporter subunit[1], ATP-binding component of ABC superfamily[1], B1246[2][1], OppD[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): oppABCDF[2], OP00313, oppABCD

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(oppD)    Textpresso(oppD)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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