rsmD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''rsmD'' | ''rsmD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yhhF, ECK3449, b3465, JW3430''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ''yhhF, ECK3449, b3465, JW3430''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted methyltransferase<ref name='LIB:EcoCyc10.6'/>; 16S rRNA m<sup>2</sup>G966 methyltransferase<ref name='LIB:EcoCyc11.1'/> | predicted methyltransferase<ref name='LIB:EcoCyc10.6'/>; 16S rRNA m<sup>2</sup>G966 methyltransferase<ref name='LIB:EcoCyc11.1'/> | ||
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16S rRNA m(2)G966 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | 16S rRNA m(2)G966 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B3465<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhhF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmD<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | predicted methyltransferase<ref name='LIB:Riley_2006'/>, B3465<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhhF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmD<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0031167 rRNA methylation ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
* GO:0008990 rRNA (guanine-N2-)-methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yhhF|yhhF]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yhhF|yhhF]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=rsmD&loc=MG1655:3602416..3603012,W3110:4036022..4035426,REL606:3535081..3535677 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3535081&end=3535677&gene=rsmD&aa=mkkpnhsgsgqiriiggqwrgrklpvpdspglrpttdrvretlfnwlapvivdaqcldcfagsgalglealsryaagatliemdravsqqliknlatlkagnarvvnsnamsflaqkgtphnivfvdppfrrglleetinlledngwladealiyvesevenglptvpanwslhrekvagqvayrlyqreaqgesdad Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rsmD+AND+escherichia+coli Pubmed(rsmD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rsmD Textpresso(rsmD)] | |||
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Revision as of 23:34, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
rsmD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
predicted methyltransferase[3]; 16S rRNA m2G966 methyltransferase[2] 16S rRNA m(2)G966 methyltransferase, SAM-dependent[4] |
| Product Synonyms(s) |
predicted methyltransferase[1], B3465[3][1], YhhF[3][1], RsmD[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A yhhF mutation confers a slight growth disadvantage. Modifies intact 30S subunits.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.