serC:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
update QV table
Line 27: Line 27:


|-
|-
!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''serC''  
''serC''  
|-
|-
!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK0898, b0907, JW0890, pdxC, pdxF''<ref name='LIB:Riley_2006'/>
''ECK0898, b0907, JW0890, pdxC, pdxF''<ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
||
SerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
SerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Line 43: Line 43:
Phosphoserine aminotransferase<ref name='LIB:EcoGene'/>
Phosphoserine aminotransferase<ref name='LIB:EcoGene'/>
|-
|-
!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
3-phosphoserine/phosphohydroxythreonine aminotransferase<ref name='LIB:Riley_2006'/>, B0907<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
3-phosphoserine/phosphohydroxythreonine aminotransferase<ref name='LIB:Riley_2006'/>, B0907<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SerC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdxC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
||
||
'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0004648 phosphoserine transaminase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006564 L-serine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0042823 pyridoxal phosphate biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


|-
|-
!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
 
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:serC|serC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:serC-aroA|serC-aroA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:serC|serC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:serC-aroA|serC-aroA]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[http://ecoliwiki.net/tools/display_dna.php?gene=serC&loc=MG1655:956876..957964,W3110:958075..959163,DH10B:1010804..1011892,REL606:974745..975833 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=974745&end=975833&gene=serC&aa=maqifnfssgpamlpaevlkqaqqelrdwnglgtsvmevshrgkefiqvaeeaekdfrdllnvpsnykvlfchgggrgqfaavplnilgdkttadyvdagywaasaikeakkyctpnvfdakvtvdglravkpmrewqlsdnaaymhycpnetidgiaidetpdfgadvvvaadfsstilsrpidvsrygviyagaqknigpagltivivredllgkaniacpsildysilndngsmfntpptfawylsglvfkwlkanggvaemdkinqqkaellygvidnsdfyrndvakanrsrmnvpfqladsaldklfleesfaaglhalkghrvvggmrasiynamplegvkaltdfmveferrhg Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=serC+AND+escherichia+coli Pubmed(serC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=serC Textpresso(serC)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 23:32, 21 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

serC

Gene Synonym(s)

ECK0898, b0907, JW0890, pdxC, pdxF[1]

Product Desc.

SerC[2][3];

Component of PSERTRANSAM-CPLX[2]

Phosphoserine aminotransferase[4]

Product Synonyms(s)

3-phosphoserine/phosphohydroxythreonine aminotransferase[1], B0907[2][1], SerC[2][1], PdxF[2][1], PdxC[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): serC[2], serC-aroA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(serC)    Textpresso(serC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]





References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=serC:Quickview&oldid=1030693"