soxR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''soxR'' | ''soxR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4055, b4063, JW4024''<ref name='LIB:Riley_2006'/> | ''ECK4055, b4063, JW4024''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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SoxR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | SoxR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Redox-sensitive transcriptional activator for soxS; superoxide response; AraC family<ref name='LIB:EcoGene'/> | Redox-sensitive transcriptional activator for soxS; superoxide response; AraC family<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing<ref name='LIB:Riley_2006'/>, B4063<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, redox-sensing activator of soxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing<ref name='LIB:Riley_2006'/>, B4063<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, redox-sensing activator of soxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:soxR|soxR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:soxR|soxR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=soxR&loc=MG1655:4275492..4275956,W3110:4281059..4281523,DH10B:4375188..4375652,REL606:4256402..4256866 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4256402&end=4256866&gene=soxR&aa=mekklprikalltpgevakrsgvavsalhfyeskglitsirnsgnqrrykrdvlryvaiikiaqrigiplatigeafgvlpeghtlsakewkqlssqwreeldrrihtlvalrdeldgcigcgclsrsdcplrnpgdrlgeegtgarlledeqn Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=soxR+AND+escherichia+coli Pubmed(soxR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=soxR Textpresso(soxR)] | |||
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Revision as of 23:30, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
soxR |
|---|---|
| Gene Synonym(s) |
ECK4055, b4063, JW4024[1] |
| Product Desc. |
SoxR transcriptional dual regulator[2][3] Redox-sensitive transcriptional activator for soxS; superoxide response; AraC family[4] |
| Product Synonyms(s) |
DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing[1], B4063[2][1], SoxR[2][1], redox-sensing activator of soxS[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
SoxR responds to superoxide and activates the SoxS global regulator in a regulatory cascade; reduced by RseC and RsxABCDGE.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.