soxS:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''soxS'' | ''soxS'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4054, b4062, JW4023''<ref name='LIB:Riley_2006'/> | ''ECK4054, b4062, JW4023''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/>; SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/> | SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/>; SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/> | ||
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Global transcription regulator for superoxide response; AraC family<ref name='LIB:EcoGene'/> | Global transcription regulator for superoxide response; AraC family<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B4062<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulation of superoxide response regulon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B4062<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulation of superoxide response regulon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:soxS|soxS]]<ref name='LIB:EcoCyc10.6'/>, OP00296 | transcription unit(s): [[:Category:Txn_unit:soxS|soxS]]<ref name='LIB:EcoCyc10.6'/>, OP00296 | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=soxS&loc=MG1655:4275406..4275083,W3110:4280973..4280650,DH10B:4375102..4374779,REL606:4256316..4255993 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4256316&end=4255993&gene=soxS&aa=mshqkiiqdliawidehidqplnidvvakksgyskwylqrmfrtvthqtlgdyirqrrlllaavelrtterpifdiamdlgyvsqqtfsrvfrrqfdrtpsdyrhrl Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=soxS+AND+escherichia+coli Pubmed(soxS)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=soxS Textpresso(soxS)] | |||
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Revision as of 23:30, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
soxS |
|---|---|
| Gene Synonym(s) |
ECK4054, b4062, JW4023[1] |
| Product Desc. |
SoxS transcriptional activator[2]; SoxS transcriptional dual regulator[3] Global transcription regulator for superoxide response; AraC family[4] |
| Product Synonyms(s) |
DNA-binding transcriptional dual regulator[1], B4062[2][1], SoxS[2][1], regulation of superoxide response regulon[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Induces sox regulon when superoxide levels increase. Induced during biofilm formation. SoxS is unstable except in a lon ftsH double mutant. This unstability is suggested to play a role in the rapid return of the regulon's gene expression to preinduced levels.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.