trmA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''trmA''  
''trmA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3957, b3965, JW3937, rT''<ref name='LIB:Riley_2006'/>
''ECK3957, b3965, JW3937, rT''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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tRNA (uracil-5-)-methyltransferase<ref name='LIB:EcoCyc10.6'/>; tRNA(m<sup>5</sup>U54)methyltransferase<ref name='LIB:EcoCyc11.1'/>
tRNA (uracil-5-)-methyltransferase<ref name='LIB:EcoCyc10.6'/>; tRNA(m<sup>5</sup>U54)methyltransferase<ref name='LIB:EcoCyc11.1'/>
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tRNA (m5U54)-methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
tRNA (m5U54)-methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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tRNA (uracil-5-)-methyltransferase<ref name='LIB:Riley_2006'/>, B3965<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
tRNA (uracil-5-)-methyltransferase<ref name='LIB:Riley_2006'/>, B3965<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0009021 tRNA (uracil-5-)-methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0000049 tRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019843 rRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0030488 tRNA methylation ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:trmA|trmA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:trmA|trmA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=trmA&loc=MG1655:4161293..4160193,W3110:3473411..3474511,REL606:4143131..4142031,DH10B:4260990..4259890 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4260990&end=4259890&gene=trmA&aa=mtpehlpteqyeaqlaekvvrlqsmmapfsdlvpevfrspvshyrmraefriwhdgddlyhiifdqqtksrirvdsfpaaselinqlmtamiagvrnnpvlrhklfqidylttlsnqavvsllyhkklddewrqeaealrdalraqnlnvhligratktkieldqdyiderlpvagkemiyrqvensftqpnaamniqmlewaldvtkgskgdllelycgngnfslalarnfdrvlateiakpsvaaaqyniaanhidnvqiirmaaeeftqamngvrefnrlqgidlksyqcetifvdpprsgldsetekmvqayprilyiscnpetlcknletlsqthkverlalfdqfpythhmecgvlltak Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=trmA+AND+escherichia+coli Pubmed(trmA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=trmA Textpresso(trmA)]


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Revision as of 23:27, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

trmA

Gene Synonym(s)

ECK3957, b3965, JW3937, rT[1]

Product Desc.

tRNA (uracil-5-)-methyltransferase[2]; tRNA(m5U54)methyltransferase[3]

tRNA (m5U54)-methyltransferase, SAM-dependent[4]

Product Synonyms(s)

tRNA (uracil-5-)-methyltransferase[1], B3965[2][1], TrmA[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): trmA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(trmA)    Textpresso(trmA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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The trmA gene is essential.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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