trmJ:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''trmJ''  
''trmJ''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yfhQ, ECK2529, b2532, JW2516''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yfhQ, ECK2529, b2532, JW2516''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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tRNA:Cm32/Um32 methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
tRNA:Cm32/Um32 methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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tRNA Cm32/Um32 methyltransferase, SAM-dependent; low abundance protein<ref name='LIB:EcoGene'/>
tRNA Cm32/Um32 methyltransferase, SAM-dependent; low abundance protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B2532<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted methyltransferase<ref name='LIB:Riley_2006'/>, B2532<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0016300 tRNA (uracil) methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016427 tRNA (cytosine)-methyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0030488 tRNA methylation ([http://www.geneontology.org/GO.evidence.shtml IMP,IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfhQ|yfhQ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfhQ|yfhQ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=trmJ&loc=MG1655:2661345..2660605,W3110:2661979..2661239,REL606:2583282..2584022 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2583282&end=2584022&gene=trmJ&aa=mlqnirivlvetshtgnmgsvaramktmgltnlwlvnplvkpdsqaialaagasdvignahivdtldealagcslvvgtsarsrtlpwpmldprecglksvaeaantpvalvfgrervgltneelqkchyhvaiaanpeysslnlamavqviayevrmawlatqengeqveheetpyplvddlerfyghleqtllatgfirenhpgqvmnklrrlftrarpesqelnilrgilasieqqnkgnkae Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=trmJ+AND+escherichia+coli Pubmed(trmJ)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=trmJ Textpresso(trmJ)]


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Revision as of 23:27, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

trmJ

Gene Synonym(s)

yfhQ, ECK2529, b2532, JW2516[1][2]

Product Desc.

tRNA:Cm32/Um32 methyltransferase[2][3];

Component of tRNA:Cm32/Um32 methyltransferase[3]

tRNA Cm32/Um32 methyltransferase, SAM-dependent; low abundance protein[4]

Product Synonyms(s)

predicted methyltransferase[1], B2532[2][1], YfhQ[2][1], TrmJ[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfhQ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(trmJ)    Textpresso(trmJ)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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