tyrB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''tyrB''  
''tyrB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4046, b4054, JW4014''<ref name='LIB:Riley_2006'/>
''ECK4046, b4054, JW4014''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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TyrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
TyrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Tyrosine aminotransferase; aromatic amino acid aminotransferase; phenylalanine aminotransferase; dicarboxylic amino acid aminotransferase; homodimeric<ref name='LIB:EcoGene'/>
Tyrosine aminotransferase; aromatic amino acid aminotransferase; phenylalanine aminotransferase; dicarboxylic amino acid aminotransferase; homodimeric<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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tyrosine aminotransferase, tyrosine-repressible, PLP-dependent<ref name='LIB:Riley_2006'/>, B4054<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TyrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
tyrosine aminotransferase, tyrosine-repressible, PLP-dependent<ref name='LIB:Riley_2006'/>, B4054<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TyrB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009094 L-phenylalanine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP,IDA])
* GO:0006571 tyrosine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0009098 leucine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0019292 tyrosine biosynthetic process from chorismate via 4-hydroxyphenylpyruvate ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006532 aspartate biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Molecular Function'''
* GO:0008793 aromatic-amino-acid transaminase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP])
* GO:0050048 L-leucine:2-oxoglutarate aminotransferase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0030170 pyridoxal phosphate binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:tyrB|tyrB]]<ref name='LIB:EcoCyc10.6'/>, OP00123  
transcription unit(s): [[:Category:Txn_unit:tyrB|tyrB]]<ref name='LIB:EcoCyc10.6'/>, OP00123  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=tyrB&loc=MG1655:4265137..4266330,W3110:4270704..4271897,DH10B:4364833..4366026,REL606:4246046..4247239 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4246046&end=4247239&gene=tyrB&aa=mfqkvdayagdpiltlmerfkedprsdkvnlsiglyynedgiipqlqavaeaearlnaqphgaslylpmeglncyrhaiapllfgadhpvlkqqrvatiqtlggsgalkvgadflkryfpesgvwvsdptwenhvaifagagfevstypwydeatngvrfndllatlktlparsivllhpcchnptgadltndqwdavieilkarelipfldiayqgfgagmeedayairaiasaglpalvsnsfskifslygervgglsvmcedaeaagrvlgqlkatvrrnyssppnfgaqvvaavlndealkaswlaeveemrtrilamrqelvkvlstempernfdyllnqrgmfsytglsaaqvdrlreefgvyliasgrmcvaglntanvqrvakafaavm Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tyrB+AND+escherichia+coli Pubmed(tyrB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=tyrB Textpresso(tyrB)]


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Revision as of 23:26, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

tyrB

Gene Synonym(s)

ECK4046, b4054, JW4014[1]

Product Desc.

TyrB[2][3];

Component of TYRB-DIMER[2]; tyrosine aminotransferase[3]

Tyrosine aminotransferase; aromatic amino acid aminotransferase; phenylalanine aminotransferase; dicarboxylic amino acid aminotransferase; homodimeric[4]

Product Synonyms(s)

tyrosine aminotransferase, tyrosine-repressible, PLP-dependent[1], B4054[2][1], TyrB[2][1]

Function from GO

Biological Process

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tyrB[2], OP00123

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(tyrB)    Textpresso(tyrB)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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tyrB is in the TyrR regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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