selU:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''selU''  
''selU''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0496, b0503, JW0491''<ref name='LIB:Riley_2006'/>, ybbB product
''ECK0496, b0503, JW0491'', ybbB<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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EG11768<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EG11768<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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tRNA 2-selenouridine synthase, selenophosphate-dependent; replaces a sulfur atom in 2-thiouridine in tRNA with selenium; required for 5-methylaminomethyl-2-selenouridine synthesis<ref name='LIB:EcoGene'/>
tRNA 2-selenouridine synthase, selenophosphate-dependent; replaces a sulfur atom in 2-thiouridine in tRNA with selenium; required for 5-methylaminomethyl-2-selenouridine synthesis<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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tRNA 2-selenouridine synthase, selenophosphate-dependent<ref name='LIB:Riley_2006'/>, B0503<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
tRNA 2-selenouridine synthase, selenophosphate-dependent<ref name='LIB:Riley_2006'/>, B0503<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0002098 tRNA wobble uridine modification ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0043828 tRNA 2-selenouridine synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ybbB&loc=MG1655:530450..529356,W3110:530450..529356,DH10B:469781..468687 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=469781&end=468687&gene=ybbB&aa=mqerhteqdyralliadtpiidvrapiefehgampaainlplmnnderaavgtcykqqgsdaalalghklvageirqqrmdawraaclqnpqgilccarggqrshivqswlhaagidyplveggykalrqtaiqatielaqkpivliggctgsgktllvqqqpngvdleglarhrgsafgrtlqpqlsqasfenllaaemlktdarqnlrlwvledesrmigsnhlpeclrermtqaaiavvedpfeirlerlneeyflrmhhdfthaygdeqgwqeyceylhhglsaikrrlglqrynelaarldaalttqlttgstdghlawlvplleeyydpmyryqlekkaekvvfrgewaevaewvkar Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybbB+AND+escherichia+coli Pubmed(ybbB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ybbB Textpresso(ybbB)]


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Revision as of 23:21, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

selU

Gene Synonym(s)

ECK0496, b0503, JW0491, ybbB[1]

Product Desc.

EG11768[2][3]

tRNA 2-selenouridine synthase, selenophosphate-dependent; replaces a sulfur atom in 2-thiouridine in tRNA with selenium; required for 5-methylaminomethyl-2-selenouridine synthesis[4]

Product Synonyms(s)

tRNA 2-selenouridine synthase, selenophosphate-dependent[1], B0503[2][1], YbbB[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ybbB)    Textpresso(ybbB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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YbbB has a rhodanese domain.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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