ygfZ:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''ygfZ'' | ''ygfZ'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2893, b2898, JW2866, up14, yzzW''<ref name='LIB:Riley_2006'/> | ''ECK2893, b2898, JW2866, up14, yzzW''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate<ref name='LIB:EcoGene'/> | Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted folate-dependent regulatory protein<ref name='LIB:Riley_2006'/>, B2898<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YzzW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgfZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted folate-dependent regulatory protein<ref name='LIB:Riley_2006'/>, B2898<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YzzW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgfZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0009451 RNA modification ([http://www.geneontology.org/GO.evidence.shtml IGI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=ygfZ&loc=MG1655:3039335..3040315,W3110:3039969..3040949,REL606:2927066..2928046,DH10B:3133205..3134185 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3133205&end=3134185&gene=ygfZ&aa=maftpfpprqptasarlpltlmtlddwalatitgadsekymqgqvtadvsqmaedqhllaahcdakgkmwsnlrlfrdgdgfawierrsvrepqltelkkyavfskvtiapddervllgvagfqaraalanlfselpskekqvvkegattllwfehpaerflivtdeatanmltdklrgeaelnnsqqwlalnieagfpvidaansgqfipqatnlqalggisfkkgcytgqemvarakfrgankralwllagsasrlpeagedlelkmgenwrrtgtvlaavkledgqvvvqvvmnndmepdsifrvrddantlhieplpyslee Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygfZ+AND+escherichia+coli Pubmed(ygfZ)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ygfZ Textpresso(ygfZ)] | |||
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Revision as of 23:02, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
ygfZ |
|---|---|
| Gene Synonym(s) |
ECK2893, b2898, JW2866, up14, yzzW[1] |
| Product Desc. |
predicted folate-dependent regulatory protein[2][3] Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate[4] |
| Product Synonyms(s) |
predicted folate-dependent regulatory protein[1], B2898[2][1], YzzW[2][1], YgfZ[2][1] |
| Function from GO |
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A null ygfZ mutation suppresses a null hda mutation. YgfZ may be a regulatory working through modified tRNAs. YgfZ is structurally similar to an enzyme involved in the betaine catabolism pathway (DMGO) of A. globiformis. YgfZ has a yeast homolog, CAF17, that is a component of the transcriptional regulatory complex. Induced by plumbagin.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.