ynhG:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ynhG''  
''ynhG''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1674, b1678, JW1668''<ref name='LIB:Riley_2006'/>
''ECK1674, b1678, JW1668''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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putative ATP synthase subunit<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>
putative ATP synthase subunit<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>
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Murein L,D-transpeptidase, periplasmic <ref name='LIB:EcoGene'/>
Murein L,D-transpeptidase, periplasmic <ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, YnhG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1678<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
conserved protein<ref name='LIB:Riley_2006'/>, YnhG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1678<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0008954 peptidoglycan synthetase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0016755 transferase activity, transferring amino-acyl groups ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0016807 cysteine-type carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Biological Process'''
* GO:0010382 cellular cell wall metabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0043164 Gram-negative-bacterium-type cell wall biogenesis ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ynhG|ynhG]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ynhG|ynhG]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ynhG&loc=MG1655:1756749..1755745,W3110:1760439..1759435,DH10B:1847320..1846316,REL606:1735992..1734988 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1735992&end=1734988&gene=ynhG&aa=mkraslltltligafsaiqaawavdyplpptgsrlvgqnqtytvqegdknlqaiarrfdtaamlileanntiapvpkpgttitipsqlllpdaprqgiivnlaelrlyyyppgenivqvypigiglqgletpvmetrvgqkipnptwtptagirqrslergiklppvvpagpnnplgryalrlahgngeylihgtsapdsvglrvssgcirmnapdikalfssvrtgtpvkvinepvkysvepngmryvevhrplsaeeqqnvqtmpytlpagftqfkdnkavdqklvdkalyrragypvsvssgatpaasnapsvesaqngepeqgnmlrvtq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ynhG+AND+escherichia+coli Pubmed(ynhG)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ynhG Textpresso(ynhG)]


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Revision as of 22:52, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ynhG

Gene Synonym(s)

ECK1674, b1678, JW1668[1]

Product Desc.

putative ATP synthase subunit[2]; conserved protein[3]

Murein L,D-transpeptidase, periplasmic [4]

Product Synonyms(s)

conserved protein[1], YnhG[2][1], B1678[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ynhG[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ynhG)    Textpresso(ynhG)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YngH catalyzes the rare meso-DAP(3)-->meso-DAP(3) murein cross-links (Magnet, 2008). First 23 aa are predicted to be a type I signal peptide. ErfK family.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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