ygfZ:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''ygfZ''  
''ygfZ''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK2893, b2898, JW2866, up14, yzzW''<ref name='LIB:Riley_2006'/>
''ECK2893, b2898, JW2866, up14, yzzW''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate<ref name='LIB:EcoGene'/>
Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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predicted folate-dependent regulatory protein<ref name='LIB:Riley_2006'/>, B2898<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YzzW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgfZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted folate-dependent regulatory protein<ref name='LIB:Riley_2006'/>, B2898<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YzzW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgfZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 02:17, 10 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ygfZ

Gene Synonym(s)

ECK2893, b2898, JW2866, up14, yzzW[1]

Product Desc.

predicted folate-dependent regulatory protein[2][3]

Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate[4]

Product Synonyms(s)

predicted folate-dependent regulatory protein[1], B2898[2][1], YzzW[2][1], YgfZ[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygfZ[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


A null ygfZ mutation suppresses a null hda mutation. YgfZ may be a regulatory working through modified tRNAs. YgfZ is structurally similar to an enzyme involved in the betaine catabolism pathway (DMGO) of A. globiformis. YgfZ has a yeast homolog, CAF17, that is a component of the transcriptional regulatory complex. Induced by plumbagin.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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