rlmC:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''rumA''  
''rumA''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK2779, b2785, JW2756, ygcA''<ref name='LIB:Riley_2006'/>
''ECK2779, b2785, JW2756, ygcA''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent<ref name='LIB:EcoGene'/>
23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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23S rRNA (uracil-5)-methyltransferase<ref name='LIB:Riley_2006'/>, B2785<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
23S rRNA (uracil-5)-methyltransferase<ref name='LIB:Riley_2006'/>, B2785<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rumA|rumA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 05:51, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rumA

Gene Synonym(s)

ECK2779, b2785, JW2756, ygcA[1]

Product Desc.

23S ribosomal RNA 5-methyluridine methyltransferase[2][3]

23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent[4]

Product Synonyms(s)

23S rRNA (uracil-5)-methyltransferase[1], B2785[2][1], YgcA[2][1], RumA[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rumA[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Although this purified proten had its N-terminus sequenced (reported in Medline 21883956, Agarwalla et al.) it is not included in the Verified set since translation was forced at the predicted start codon. All other evidence does point to this being the correct start. The initial Met is cleaved off.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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