phnF:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''phnF'' | ''phnF'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4095, b4102, JW4063''<ref name='LIB:Riley_2006'/> | ''ECK4095, b4102, JW4063''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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PhnF transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | PhnF transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Phosphonate utilization, probable regulatory gene<ref name='LIB:EcoGene'/> | Phosphonate utilization, probable regulatory gene<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation product<ref name='LIB:Riley_2006'/>, B4102 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation product<ref name='LIB:Riley_2006'/>, B4102 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:phnCDEEFGHIJKLMNOP|phnCDEEFGHIJKLMNOP]]<ref name='LIB:EcoCyc10.6'/>, OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP | transcription unit(s): [[:Category:Txn_unit:phnCDEEFGHIJKLMNOP|phnCDEEFGHIJKLMNOP]]<ref name='LIB:EcoCyc10.6'/>, OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=phnF&loc=MG1655:4320445..4319720,W3110:4327100..4326375,REL606:4301244..4300519,DH10B:4420807..4420082 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4420807&end=4420082&gene=phnF&aa=mhlsthptsyptryqeiaakleqelrqhyrcgdylpaeqqlaarfevnrhtlrraidqlvekgwvqrrqgvgvlvlmrpfdyplnaqarfsqnlldqgshptsekllsvlrpasghvadalgitegenvihlrtlrrvngvalclidhyfadltlwptlqrfdsgslhdflreqtgialrrsqtrisarraqakecqrleipnmspllcvrtlnhrdgesspaeysvsltradmieftmeh Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=phnF+AND+escherichia+coli Pubmed(phnF)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=phnF Textpresso(phnF)] | |||
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Revision as of 00:18, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
phnF |
|---|---|
| Gene Synonym(s) |
ECK4095, b4102, JW4063[1] |
| Product Desc. |
PhnF transcriptional regulator[2][3] Phosphonate utilization, probable regulatory gene[4] |
| Product Synonyms(s) |
predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation product[1], B4102 product[2][1], PhnF product[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): phnCDEEFGHIJKLMNOP[2], OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
GntR family. Pho regulon. Phosphonate utilization is cryptic in K-12.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.