pgaB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''pgaB'' | ''pgaB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ycdR, ECK1013, b1023, JW5142, hmsF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ycdR, ECK1013, b1023, JW5142, hmsF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export<ref name='LIB:EcoGene'/> | Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Biological Process''' | |||
* GO:0042710 biofilm formation ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=pgaB&loc=MG1655:1089080..1087062,W3110:1090279..1088261,DH10B:1143008..1140990,REL606:1104124..1106142 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1104124&end=1106142&gene=pgaB&aa=mlrngnkyllmlvsiimltacisqsrtsfippqdresllaeqpwphngfvaiswhnvedeaadqrfmsvrtsalreqfawlrengyqpvsiaqireahrggkplpekavvltfddgyqsfytrvfpilqafqwpavwapvgswvdtpadkqvkfgdelvdreyfatwqqvrevarsrlvelashtwnshygiqanatgsllpvyvnrayftdharyetaaeyrerirldavkmteylrtkvevnphvfvwpygeangiaieelkklgydmfftlesglanasqldsiprvliannpslkefaqqiitvqekspqrimhidldyvydenlqqmdrnidvliqrvkdmqistvylqafadpdgdglvkevwfpnrllpmkadifsrvawqlrtrsgvniyawmpvlswdldptltrvkylptgekkaqihpeqyhrlspfddrvraqvgmlyedlaghaafdgilfhddallsdyedasapaitayqqagfsgslseirqnpeqfkqwarfksraltdftlelsarvkairgphiktarnifalpviqpeseawfaqnyadflksydwtaimampylegvaeksadqwliqltnqiknipqakdksilelqaqnwqkngqhqaissqqlahwmsllqlngvknygyypdnflhnqpeidlirpefstawypknd Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaB+AND+escherichia+coli Pubmed(pgaB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=pgaB Textpresso(pgaB)] | |||
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Revision as of 23:36, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
pgaB |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
predicted enzyme associated with biofilm formation[2][3] Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export[4] |
| Product Synonyms(s) |
predicted enzyme associated with biofilm formation[1], B1023[2][1], YcdR[2][1], HmsF[2][1], PgaB[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
PGA is a biofilm adhesin polysaccharide. PgaB is homologous to Y. pestis hemin storage protein HmsF, but is unable to complement hmsF mutations. First 20 aa are a type II signal peptide. Codon usage indicates pgaB is an alien (horizontal) gene. CsrA regulon. yadE paralog. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.